Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02595 and BL02306
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_02595___yloS.1.5803.seq
# -bsequence dna-align/BL02306___thiN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02595___yloS-BL02306___thiN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02595___yloS-BL02306___thiN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02595___yloS
# 2: BL02306___thiN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity: 481/701 (68.6%)
# Similarity: 481/701 (68.6%)
# Gaps: 112/701 (16.0%)
# Score: 1632.0
#
#
#=======================================
BSNT_02595___ 1 ATGAAAACAATTAATATCGTTGCGGGAGGCCCGAAAAATCTCATTCCCG- 49
||||||||.||.|||||.||.|||||||||||..|..||||.|||||||
BL02306___thi 1 ATGAAAACGATCAATATTGTAGCGGGAGGCCCCGATCATCTTATTCCCGA 50
BSNT_02595___ 50 -----------ATCTAACCGGCTATACGGATGAACACACGCTTTGGATCG 88
|||...|||| ||||| ||||||||.|||
BL02306___thi 51 CTTGCTGCAGTATCAGGCCGG------GGATG------CGCTTTGGGTCG 88
BSNT_02595___ 89 GTGTTGACAAAGGCACCGTCACTCTCTTAGATGCCGGGATCATTCCTGTT 138
|.|||||||.||||.|.|||||.||.||.|||||.||||||.|.||||.|
BL02306___thi 89 GGGTTGACAGAGGCGCTGTCACCCTTTTGGATGCGGGGATCGTGCCTGAT 138
BSNT_02595___ 139 GAAGCCTTCGGAGATTTTGACAGCATAAC---GGAGCAAGAA----CGCC 181
|||||.|||||.||||||||||||||.|| .||||||.|| ||
BL02306___thi 139 GAAGCATTCGGGGATTTTGACAGCATCACAGACGAGCAAAAAAAAGCG-- 186
BSNT_02595___ 182 GGCGAATAGAAAAAGCCGCTCCCGCCCTTCATGTGTATCAAGCAGAAAAA 231
||.|||||.|||||||||..|||.|||.|.|||||.||.||||||
BL02306___thi 187 -----ATTGAAAAGGCCGCTCCCCGCCTCCATATTTATCAGGCGGAAAAA 231
BSNT_02595___ 232 GATCAAACAGATTTAGACCTCGCCCTTGATTGGGCGCTGGAAAAGCAGCC 281
|||||.||.|||||.|||||.| |.|||| ||||| ||.|.|
BL02306___thi 232 GATCAGACGGATTTGGACCTTG-CGTTGA------GCTGG----GCTGTC 270
BSNT_02595___ 282 GGATA-----------TTATTCAG-ATTTTCGGCATTACAGGCGGCAGAG 319
|||.| ||||| || ||.|||||||||.|.||.|||||||
BL02306___thi 271 GGACAGCGTCCTTCATTTATT-AGAATGTTCGGCATTTCGGGAGGCAGAG 319
BSNT_02595___ 320 CTGATCATTTTTTAGGAAACATTCAGCTACTGTATA--GAGGTGTA--AA 365
|.||.||||||.|.||.||..|.||.||.||.|||| |.|.||.| ||
BL02306___thi 320 CAGACCATTTTCTCGGGAATCTGCACCTTCTTTATACCGCGATGAAGCAA 369
BSNT_02595___ 366 AACGAACATAAAAA---TTAGGCTGATAGAC-----AAACAAAATCA-TA 406
|||| |.||.| |.| ||||.||| |||.|..|||| .|
BL02306___thi 370 AACG----TCAAGACCGTCA---TGATCGACCGCCAAAATACGATCAGCA 412
BSNT_02595___ 407 TTCAAATGTTCC------CTCCTGGTGAATA---TGATATTGAGAAGGAT 447
|.|| ||| ||||| ||| |.|| |.|.|||
BL02306___thi 413 TGCA-----TCCCCCAGGCTCCT-----ATACCGTCAT-----GCATGAT 447
BSNT_02595___ 448 GAAA-ATAAGCGATATATCTCCTTCATACCGTTTTCCGAAGAC-ATACAT 495
.||| |.||.|| |||||.||.|||.|.||| |||.||.|||| .||.|.
BL02306___thi 448 CAAACAAAACCG-TATATTTCATTCCTGCCG-TTTGCGGAGACGGTAAAA 495
BSNT_02595___ 496 GAGCTGACCCT-GACCGGTTTTAAATATCCTCTAAATAATTGTCATATTA 544
.|.||..|.|| || .||.|||||.|||.||.|||||||.|||||||||.
BL02306___thi 496 AACCTTTCTCTCGA-AGGATTTAAGTATTCTTTAAATAAGTGTCATATTG 544
BSNT_02595___ 545 CGCTCGGTTCAACACTATGTATTAGTAACGAACTCATTCATTCACGAGGT 594
|.||||||||.||||||||||||||||||||||||||.|||||||.||||
BL02306___thi 545 CTCTCGGTTCGACACTATGTATTAGTAACGAACTCATCCATTCACAAGGT 594
BSNT_02595___ 595 ACTTTTTCGTTTGCAAAAGGCATATTAATAATGATAAGAAGCACGGATTA 644
.|||||||||||.||.||||||||||||||||||||||||||||.|||||
BL02306___thi 595 GCTTTTTCGTTTTCAGAAGGCATATTAATAATGATAAGAAGCACTGATTA 644
BSNT_02595___ 645 A 645
|
BL02306___thi 645 A 645
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