Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01163 and BL02337
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:41
# Commandline: needle
# -asequence dna-align/BSNT_01163.1.5803.seq
# -bsequence dna-align/BL02337___rapK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01163-BL02337___rapK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01163-BL02337___rapK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01163
# 2: BL02337___rapK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1386
# Identity: 673/1386 (48.6%)
# Similarity: 673/1386 (48.6%)
# Gaps: 528/1386 (38.1%)
# Score: 1269.0
#
#
#=======================================
BSNT_01163 1 TTGAGTCAAGCCATACCGT--CTTC----------GCGTGTAGGTGTTAA 38
.|||| |||| || |||| |||.| |||||
BL02337___rap 1 ATGAG-CAAG-------GTCGCTTCAGAGGTGGTTGCGGG--GGTGT--- 37
BSNT_01163 39 GATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCCGGATGCTG 88
|.||.|||| |.|| .||.||||.|..|..| |..|||.|||
BL02337___rap 38 --TGAACGAAT--TCCA-----TTTGGCCATTAAAAAG--CACGATACTG 76
BSNT_01163 89 AGGTTCTG--AAAGC-------GGAGGTGGAGCAGGACA----TTCAGAA 125
|| |.| ||||| .||.|.||.|.||...| |||.| |
BL02337___rap 77 AG---CAGGCAAAGCATCTTTTTGATGAGGCGAAGTCGATGTTTTCCG-A 122
BSNT_01163 126 GATGGAAGAGGATCAGGATTTGCTGATCTATTATTCTC----TGATGTGT 171
||||||||||||||||.||.|||||...||||.|||.| |||.|.|
BL02337___rap 123 GATGGAAGAGGATCAGAATGTGCTGGCTTATTTTTCGCTTCTTGAGGAG- 171
BSNT_01163 172 TTTCGGCACCAGCTGATGCTTGATTATTTG------GAGC--------CG 207
|||.|||.|.||||||||.||.||..| |||| ||
BL02337___rap 172 ---CGGTACCGGATGATGCTTTATGATGCGAGGGGAGAGCGGCTGCCGCG 218
BSNT_01163 208 GGACAGCCTTA-----------CGGAAATCGTCCTACAGTGACA--GAGC 244
|| ||.|||| ||.|.|||| |||| || ||||
BL02337___rap 219 GG--AGTCTTATTTTAATGATTCGCAGATCG------AGTG-CATCGAGC 259
BSNT_01163 245 TTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAA 294
||||...||| |.|||..
BL02337___rap 260 ---------------AGACGGATCA------------------TATGATT 276
BSNT_01163 295 TACTACTCTTTGT--TTTTCCGCGGC-ATGTATGAATTTGACCAAAAAGA 341
.|.||||.|||.| ||||..|.||| |||.||||| ..|..|||.||||
BL02337___rap 277 GATTACTATTTCTACTTTTTTGAGGCGATGCATGAA-GCGTACAACAAGA 325
BSNT_01163 342 ATATGTGGA---AGCGATCGG---GTATTATCGCGAG---GCGGAGAAAG 382
||||.|| .||||||.| ||| |.|| ||.||||||.
BL02337___rap 326 --ATGTTGAGCGGGCGATCAGTCTGTA------CAAGGTTGCCGAGAAAA 367
BSNT_01163 383 AACTGCCGTTTGTGTCAGATGAAATTGAGAAAGCG---GAATTCCATTTT 429
|||||.||...|||.|.|||.|.|||| ||||| ||.||..|||||
BL02337___rap 368 AACTGGCGAAGGTGCCCGATCAGATTG---AAGCGGCCGAGTTTTATTTT 414
BSNT_01163 430 AAAGTGGCC-GAAGC-GTAT-TATCACAT-GAAGCAAACCCATGTGTCGA 475
||||||.|| | || |||| |.||.|.| | ||||| ||| ||.
BL02337___rap 415 AAAGTGTCCTG--GCTGTATATGTCTCTTCG--GCAAA---ATG---CGG 454
BSNT_01163 476 TGCATCATATTCT-TCAA----GCCTTAGAC---------ATTTATCAAA 511
| |||| |||| ||...|||| ||||| ||||
BL02337___rap 455 T--------TTCTCTCAATTATGCGAGAGACGCGATGAATATTTA-CAAA 495
BSNT_01163 512 ACCATCCCTTATACAGCATTA---GAACGATACAAAGCTTG--------- 549
| .||||.| |.||||.|.||||||.|
BL02337___rap 496 A-------------TGCATGACGGGTACGAAAAAAAGCTGGCGATTTCCC 532
BSNT_01163 550 --TTTGTGATCGCCGG-CAACTATGATGATTTCAAACATTATGATAAAGC 596
.|||||||.| || ||| ||| ||||...|||..|||
BL02337___rap 533 AAGTTGTGATGG--GGACAA--------ATT----ACATGCAGATGCAGC 568
BSNT_01163 597 GCTCCCGCATTTAGAAAAGGCGCTG------------GAATTGGCCATGG 634
|| |||| ||.|.|||..| |||| |.||.|
BL02337___rap 569 GC-------TTTA-AAGATGCGGAGAAGTACTTTGAAGAAT---CGATTG 607
BSNT_01163 635 ACATT--CAAAA----TGACAGGTTTATCGCCATTTCTCTATT-GAACAT 677
|.||| ||||| |||| |.|| ||||| || |||
BL02337___rap 608 AAATTTCCAAAAAGATTGAC--GATT-----CATTT-----TTAGAA--- 642
BSNT_01163 678 CGCGAACAGCT--ATGACAGATCAGGAGACGATCAG-ATGGCTGTAGAAC 724
|||| .||| ||.||| || ||||| || .|||||...|
BL02337___rap 643 -GCGA--TGCTTCATCACA-AT---------ATCAGCAT-TCTGTATTCC 678
BSNT_01163 725 ATTTCCAAAAAGCGGC---------GAAAGTA------------AGCAGA 753
|.||| |||| |||.|.| ||||
BL02337___rap 679 AATTC-------CGGCCGGTCTCAGGAATGCATTCTCGCCGTCCAGCA-- 719
BSNT_01163 754 GAGAAAGTGCCTGATCTGCTT---------CCGA-------AAGTCTTGT 787
||||| |||| |||||..|.
BL02337___rap 720 ----------------TGCTTTGAGCAACGCCGAATGGTGCAAGTCAAGC 753
BSNT_01163 788 T-----------TGGATT---AAGCTG------GACATTATGTAAAGCGG 817
| |.|.|| |.|||| ||..||.|..|||.|||
BL02337___rap 754 TACTATATCAACTCGCTTTACATGCTGACCAGAGAGTTTTTCAAAATCGG 803
BSNT_01163 818 GCCAAACACAGAA--GGC---GTTTCAGTTCATAGAGGAAGGATTAGACC 862
|.|| |||||| ||| |||..| ||||| |..||||
BL02337___rap 804 --CGAA-ACAGAAGCGGCCCTGTTCTA--TCATA-AAAAAGG-------- 839
BSNT_01163 863 ATATCACAGCACGTTCTCACAAATTTTATAAAGAATTGTTTCTGTTCTTG 912
||||.|.| ||||..|.|||.|
BL02337___rap 840 -----ACAGGAGG--------AATTAAAGAAAAA---------------- 860
BSNT_01163 913 CAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTTTT 962
||.|.|.|||.| |.|||||...|||||..|| ||..|||
BL02337___rap 861 -----CGGGAATAAGCA------TTATGAAAAGAAAATAAAT-ATTATTT 898
BSNT_01163 963 A--AGC--TATTTC---GAAAA-------------AAAGA--ACCTGCAC 990
| ||| ||||.| ||||| ||||| ||.|.||
BL02337___rap 899 ATGAGCTGTATTGCCATGAAAACGTAAAAAGCATCAAAGACGACATCCA- 947
BSNT_01163 991 GCTTACAT--------TGAAGCATGTGCCCGGAGTGCTGCCG--CTGTTT 1030
||.|.| ||||..||.|...|||.|| ||| || ||.|.|
BL02337___rap 948 --TTCCTTGGACGAGATGAATGATTTAGACGGTGT-CTG-CGATCTTTCT 993
BSNT_01163 1031 TTGAAAGC--------AGCTGTCACTTTGA--------------ACAAG- 1057
|| || |||| |.||||| |||||
BL02337___rap 994 TT----GCTCATCTCAAGCT---ATTTTGAGAAAAAAGGAGATGACAAGA 1036
BSNT_01163 1058 --CCGCTGCGTTTTATCGGAA-AGTGCTGAAAGCCCAAGA-------AGA 1097
.|||||...|||.|...|| |.|..||||||||.||.| |||
BL02337___rap 1037 AAGCGCTGGAATTTGTTAAAATATTCATGAAAGCCGAAAACAAAATGAGA 1086
BSNT_01163 1098 T-ATTCTAAAAGGAGAGTG-TTTATATGCCTATTAA 1131
| ||| ||| ||||| ..||| ||.| ||.|
BL02337___rap 1087 TCATT-----AGG-GAGTGAGGTAT-TGTC-ATGA- 1113
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