Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01252 and BL02341
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:45
# Commandline: needle
# -asequence dna-align/BSNT_01252___yfmT.1.5803.seq
# -bsequence dna-align/BL02341___yfmT.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01252___yfmT-BL02341___yfmT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01252___yfmT-BL02341___yfmT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01252___yfmT
# 2: BL02341___yfmT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1517
# Identity: 1096/1517 (72.2%)
# Similarity: 1096/1517 (72.2%)
# Gaps: 118/1517 ( 7.8%)
# Score: 3838.5
#
#
#=======================================
BSNT_01252___ 1 ATGTTTCAATATGAA--GAGTTGAATAAACAGTTTATCGGCGGGAAATGG 48
|||.||||| || || ||..|.||....||.|..||.||.|||.|||||
BL02341___yfm 1 ATGATTCAA-AT-AACTGACCTCAACCGTCAATACATAGGAGGGGAATGG 48
BSNT_01252___ 49 CAG-GAGGGCAGCAGCCCAAA-------TGTATTGGAAAACAAA----AA 86
|| ||.|| ||||| .||.|||| |..| ||
BL02341___yfm 49 -AGAGACGG-------CCAAAGTGAAAGCGTGTTGG----CCGATCTGAA 86
BSNT_01252___ 87 TCCTTATACTCAAAAAAC-ATTCACAACATTCCGTAAAGCGACTGC-TGA 134
|||||.|||.||.||||| ||| .|..|.||.||.|||||||| || .||
BL02341___yfm 87 TCCTTTTACCCATAAAACGATT-GCCTCTTTTCGGAAAGCGAC-GCGGGA 134
BSNT_01252___ 135 CGATGTAGATGAAGCGTATCGGGC--AGCGGCGCT---GGCAAAGAAAAA 179
.|||||.||||..||.|| | |||.||||| |||.||.||.||
BL02341___yfm 135 GGATGTCGATGCGGCTTA-----CAAAGCTGCGCTTGAGGCGAAAAAGAA 179
BSNT_01252___ 180 ATGGGATGCGGTCAACCCGTTTGAGAAAAGAACAATTTTAGAAAAAGCCG 229
||||||||..|||||.||.|.|||.|||||..||||||||||||||||||
BL02341___yfm 180 ATGGGATGGCGTCAATCCCTATGAAAAAAGGGCAATTTTAGAAAAAGCCG 229
BSNT_01252___ 230 TCACGTATATTGAAGAAAATGAAGAAGCCATTATTTATTTAATTATGGAG 279
...|.|||||||||||.|||..||||||.|||.|.|.|.|.|||||||||
BL02341___yfm 230 CGGCTTATATTGAAGACAATAGAGAAGCGATTGTGTTTCTCATTATGGAG 279
BSNT_01252___ 280 GAGCTAGGCGGTACAAGGCTCAAAGCGGCTTTTGAAATCGGACTTGTCAA 329
|||||.|||||.|||.||||.|||||||||||||||||||..||||||..
BL02341___yfm 280 GAGCTTGGCGGAACACGGCTGAAAGCGGCTTTTGAAATCGATCTTGTCGT 329
BSNT_01252___ 330 AAACATCATGAAAGAAGCGGCAACGTTCCCAATCCGCATGGAGGGGAAAA 379
.||.||.||.|||||||||||....|||||..||...|||||.||.||||
BL02341___yfm 330 CAATATGATCAAAGAAGCGGCGGGCTTCCCGCTCAAAATGGAAGGCAAAA 379
BSNT_01252___ 380 TTCTTCCGTCCACAATAGATGGCAAGGAAAA-CAGATTATATCGTGTGCC 428
||||.||.||..|..|.|||||.||.||||| |.|| ||||.||..|.||
BL02341___yfm 380 TTCTCCCTTCACCGGTTGATGGGAAAGAAAATCGGA-TATACCGCATTCC 428
BSNT_01252___ 429 AGCAGGCGTTGTCGGTGTCATCAGTCCGTTTAACTTCCCATTCTTTTTAT 478
.||.||.||.|||||.||||||||||||||.||.||.||.||||||||||
BL02341___yfm 429 GGCGGGAGTGGTCGGCGTCATCAGTCCGTTCAATTTTCCGTTCTTTTTAT 478
BSNT_01252___ 479 CTATGAAATCAGTGGCGCCTGCACTCGGAGCCGGCAATGGCGTTGTGCTA 528
||.|.||||||||.|||||.||.||.||.|||||.||.||||||||..||
BL02341___yfm 479 CTGTAAAATCAGTTGCGCCCGCGCTTGGCGCCGGGAACGGCGTTGTTTTA 528
BSNT_01252___ 529 AAGCCGCATGAGGAAACGCCGATTTGCGGCGGAACGCTGATCGCGAAAAT 578
|||||||||||||||||.||||||||||||||.||||||||.||.||.||
BL02341___yfm 529 AAGCCGCATGAGGAAACACCGATTTGCGGCGGCACGCTGATTGCAAAGAT 578
BSNT_01252___ 579 TTTTG-AGAACGCGGGAATTCCAGCGGGGCTGCTGAATGTTGTTGTCACA 627
||||| |||| ||.||..||||...|||.|||||||||||.||.||||||
BL02341___yfm 579 TTTTGAAGAA-GCCGGTCTTCCGAAGGGACTGCTGAATGTCGTGGTCACA 627
BSNT_01252___ 628 GACATTGCAGAAATCGGCGACAGCTTTGTTGAGCATCCAGTGCCGCGGAT 677
||.||.|..|||||||||||||||||.|||||||||||..|.|||||.||
BL02341___yfm 628 GATATCGGGGAAATCGGCGACAGCTTCGTTGAGCATCCGATTCCGCGAAT 677
BSNT_01252___ 678 CATCTCATTTACCGGTTCTACGAAAGTCGGCAGCTACATTGGACAGCTTG 727
||||||.|||||||||||.|||||.|||||||||||.||.||.|||||.|
BL02341___yfm 678 CATCTCGTTTACCGGTTCAACGAAGGTCGGCAGCTATATCGGGCAGCTGG 727
BSNT_01252___ 728 CGATGAAGCATTTTAAAAAGCCGCTTCTTGAGCTTGGCGGAAACAGCGCC 777
||||.||.|||||.|||||.|||||.|||||.||.|||||||||||||||
BL02341___yfm 728 CGATCAAACATTTCAAAAAACCGCTGCTTGAACTCGGCGGAAACAGCGCC 777
BSNT_01252___ 778 TTCATCGTACTGGAGGATGCAGATATAGAATATGCGGTCAATGCGGCGGT 827
||.|||||.||.||||||||.|||.|.|||||.||.||||||||.|||..
BL02341___yfm 778 TTGATCGTTCTCGAGGATGCCGATTTGGAATACGCCGTCAATGCCGCGAC 827
BSNT_01252___ 828 GTTCAGCCGATTTACACATCAAGGACAGATTTGCATGTCAGCCAACCGCG 877
.||||||||.||.|||||||||||.||.||.||||||||.||||||||..
BL02341___yfm 828 TTTCAGCCGCTTCACACATCAAGGGCAAATCTGCATGTCGGCCAACCGGA 877
BSNT_01252___ 878 TGCTTGTTCATTCTTCTATTTATGACAAGT---TCC--------TTGAGC 916
|.|||||||| |..|.|||| ||| |..|||
BL02341___yfm 878 TTCTTGTTCA-----------AAAAGAAGTGTATCCGGAATTTTTAAAGC 916
BSNT_01252___ 917 TGTACCAGGC-AAAAGTGGAATC---GCTGAAAGTCGGCGACCCAATGGA 962
||| .|||.| |||||| ||| |||.|||...|||||.||..||||
BL02341___yfm 917 TGT-TCAGCCAAAAAGT---ATCCGGGCTTAAAACGGGCGATCCGCTGGA 962
BSNT_01252___ 963 TCCTGATACGATTATCGGGCC----ATTAATCAACAGCAGACAGACGGAC 1008
.|||||.||..|||||||.|| ||||||.||| |.|
BL02341___yfm 963 CCCTGAAACCGTTATCGGCCCTGTTATTAATGAAC------------GCC 1000
BSNT_01252___ 1009 GGGCTGA----TGAAGA----CTGTTGAGCAAGCAATTGAAGAAGGCGCT 1050
..||||| |.|||| |..||||..|||..||.|||||||||||.
BL02341___yfm 1001 AAGCTGAACATTTAAGAAAATCGATTGAAAAAGGCATCGAAGAAGGCGCC 1050
BSNT_01252___ 1051 GTACCAGTGAAGCTT------GGCGGAT-TTAACGGGACGATCGTGGAAC 1093
..||| |||| ||| ||| ||||.||.|...||||.||.|
BL02341___yfm 1051 ACACC------GCTTCTGAAAGGC-GATATTAAAGGCAATCTCGTCGAGC 1093
BSNT_01252___ 1094 CGACGA-TCTTAAAAGACGTCAAACC-GTTCATGAGCATTGCCAAGGAAG 1141
|||||| |||| ...||.||||..|| |.| |||....|.||||||||||
BL02341___yfm 1094 CGACGATTCTT-GCGGATGTCACGCCTGAT-ATGTCTGTCGCCAAGGAAG 1141
BSNT_01252___ 1142 AGCTGTTCGGACCAGTCGTCTCCTTTATGAAGTTTGATTCAGAAGACGAA 1191
||||||||||.||.||.||.|.|.|.|||..||||||..|.||||..||.
BL02341___yfm 1142 AGCTGTTCGGTCCGGTTGTATGCGTCATGCCGTTTGAGACCGAAGCAGAC 1191
BSNT_01252___ 1192 GCGGTGGATATCGCAAACGAAACCCCGTTTGGCTTGAGCGGTGCTGTACA 1241
|||||.||.|||||.||.||.||.||.||.||..|||||||.||.|||||
BL02341___yfm 1192 GCGGTTGAGATCGCGAATGACACGCCTTTCGGACTGAGCGGAGCCGTACA 1241
BSNT_01252___ 1242 TACGTCAAATCTTGAGCGCGGCGTGGCATTTGCGAAACGCATTGAAACAG 1291
.|||..||||.|.|||.|||||||.||..|.||.||.|..||.||.||.|
BL02341___yfm 1242 CACGGGAAATGTGGAGAGCGGCGTTGCCATCGCAAAGCAAATCGAGACGG 1291
BSNT_01252___ 1292 GCATGATTCACGTCAATGACACGACCATCAATGATGAACCGAATGTAGCC 1341
|||||||.||.||||||||||||||.|||||.|||||.|||.||||.||.
BL02341___yfm 1292 GCATGATCCATGTCAATGACACGACGATCAACGATGAGCCGCATGTCGCT 1341
BSNT_01252___ 1342 TTCGGCGGTGAAAAGCAATCAGGCCTCGGCCGTTTAAATGGTGAGTGGAG 1391
||||||||||||||||||||.||..||||..|..|.||.||.||||||||
BL02341___yfm 1342 TTCGGCGGTGAAAAGCAATCGGGGATCGGAAGGCTGAACGGAGAGTGGAG 1391
BSNT_01252___ 1392 CCTCGAAGAATTTACAACGCTGAAATGGATCTCGGTCCAGCACGAAAAAC 1441
|||.||.||||||||.||..|.||||||||.||.|||||||||.|||||.
BL02341___yfm 1392 CCTTGACGAATTTACGACATTAAAATGGATTTCCGTCCAGCACCAAAAAA 1441
BSNT_01252___ 1442 GCAGCTTCCCTTATTAA 1458
|.||.||.||.||||||
BL02341___yfm 1442 GGAGTTTTCCATATTAA 1458
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