Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06198 and BL02373
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:10
# Commandline: needle
# -asequence dna-align/BSNT_06198___yycH.1.5803.seq
# -bsequence dna-align/BL02373___yycH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06198___yycH-BL02373___yycH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06198___yycH-BL02373___yycH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06198___yycH
# 2: BL02373___yycH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1492
# Identity: 920/1492 (61.7%)
# Similarity: 920/1492 (61.7%)
# Gaps: 251/1492 (16.8%)
# Score: 2392.5
#
#
#=======================================
BSNT_06198___ 1 ATGAAGCGTGAAAATATAAAAACGATATTACTTACGGTAC----TCGTCG 46
|||||||||||||..||.|||||||||.|||| ||.| |.||..
BL02373___yyc 1 ATGAAGCGTGAAACAATTAAAACGATAATACT----GTCCCTTTTGGTTT 46
BSNT_06198___ 47 TCATCAGTCTTGTTTTTAC--------ATGGGGGATAT----GGACGTTC 84
|.|||||||||.||||||| .|.||||||.| |||..|.|
BL02373___yyc 47 TGATCAGTCTTCTTTTTACTTTTAATATTTGGGGATTTCAGGGGAATTAC 96
BSNT_06198___ 85 CAGCCAAACTTTTCTGAAGGCTCATCCTCAACAGAGTCTACTGTTC--GT 132
.| |||..| |||||.||| |||| |.|| ||
BL02373___yyc 97 GA---AAAAGT---TGAAGACTC-------ACAG--------GCTCAGGT 125
BSNT_06198___ 133 GAGAAACACAAAATCGA--AAAAACCACCCAAAAGCTGT---CTGAAACG 177
.||..|||.|.|..||| |.||||||..| ||||.||| .||||.|.
BL02373___yyc 126 CAGCGACAAACAGCCGATTACAAACCAGAC-AAAGTTGTTAAATGAAGCC 174
BSNT_06198___ 178 GTAAGGCCGAGGGACATGTTTATTCATGA----TGACGGCGCTCATTA-- 221
||.|..|||..|.|.|||||.|||||||| .|||.| |||||
BL02373___yyc 175 GTCAAACCGCAGCAAATGTTCATTCATGAGAATGGACAG----CATTATT 220
BSNT_06198___ 222 --CAAAGTGGATGACAATGCCCTCTATGAAGAAATTTGGTCTGACTTGCC 269
| ||.||||||...|.||||||....|..|.|||..||||.||..
BL02373___yyc 221 TGC----TGAATGACACGACGCTCTATTCTCAGCTCTGGGATGACATGGG 266
BSNT_06198___ 270 GCATTGGGATGTAAAA--GGAATTAAA-GATATTTCGGATCAGTATGACA 316
.|..|||||.||.||| | ||||| |||||.|||||..|.|.||||
BL02373___yyc 267 ACGATGGGAAGTCAAATCG---TTAAAGGATATCTCGGACAAATTTGAC- 312
BSNT_06198___ 317 AGGCTGGA-TTCAAGAGCTGGTTTTATG----GAATAGGCGGTTCTGAAG 361
||||.|.| |||||.|.||||.|.||.| .|||| |||
BL02373___yyc 313 AGGCAGCAGTTCAAAAACTGGCTATACGCTAAAAATA----------AAG 352
BSNT_06198___ 362 ---CCAAGCTTGA-CTTG-CAATTCAGCGATACGATTCCGATTGATATTT 406
||||..|.|| ||.| | ||||||||.|..||||||||.|||.|..
BL02373___yyc 353 ACTCCAAATTGGATCTCGTC--TTCAGCGACAACATTCCGATCGATGTGC 400
BSNT_06198___ 407 TCCAAACACTGTTTAAATGGT---CTAATCAGTCGTTTGAATACAGTTCG 453
|.||..|.||.||.||||||| |.||| ||.|.||||||||..||.
BL02373___yyc 401 TGCAGCCGCTTTTCAAATGGTCCGCCAAT---TCTTATGAATACAACTCT 447
BSNT_06198___ 454 TTTGACCATATTCTGATC--CCGTTCAATGAAACAAAAGCGAAC------ 495
||||| ||.|.|| |.|| ||.||||||||| |.||
BL02373___yyc 448 TTTGA-CAGAATC-GTTCTTCCTTTCAATGAA--------GGACGGGGCA 487
BSNT_06198___ 496 --AAGAAAATCTATTTGGTGTCTTACAGCAAGCAGCTCATTCTCGAAGTG 543
|||||.||||||||.||.||.|.||||||..||....||.|.||||.|
BL02373___yyc 488 TGAAGAAGATCTATTTTGTATCCTTCAGCAAAGAGACGGTTGTTGAAGCG 537
BSNT_06198___ 544 ACGGTTGAATCGGCGAACTACCGGAACAT--TATGAATGAC-TTGAAAAA 590
..|.||||||||||.||.|||||.||||| |.|.| ||| ||||||||
BL02373___yyc 538 GTGATTGAATCGGCAAATTACCGCAACATCCTTTCA--GACATTGAAAAA 585
BSNT_06198___ 591 CAGGCAA--TCAAATATGCCGGCGTTC---------AGTTTGTTCTCCAT 629
|.|| ||..|.||||| || |.||||...||.||
BL02373___yyc 586 ---GAAAAGTCGCAGATGCC-----TCTTTATGAGGATTTTGCAATCAAT 627
BSNT_06198___ 630 TGGCTCAAAGAAAGAGT-TCTTGCTGCCGAACAAACCGCTTACGATGGAC 678
|.||.||.||| | |||||||.|||...||.|.|||.|.|.||...
BL02373___yyc 628 TCGCGCAGAGA-----TGTCTTGCTTCCGGTTAATCGGCTGAAGCTGTCT 672
BSNT_06198___ 679 AAAAAAGAATTTGTCACTGAATCGATTAAAACAAATACC--------TTT 720
.|||||||.|.|.|.||.|||.||||.| .|| |||
BL02373___yyc 673 GAAAAAGAGTATTTTACAGAAACGATCA--------GCCCGACGCGTTTT 714
BSNT_06198___ 721 AAGCAGGCTTTGTTTAGTGATCCGAGCATTGTAAGAGAAGATTCGAA-TT 769
||..|.|||||.|||..|||||||...|..||..|..|.||..|.|| ||
BL02373___yyc 715 AAAAAAGCTTTATTTGATGATCCGCAAACCGTGCGGCAGGAAACCAACTT 764
BSNT_06198___ 770 ACAACA-ACAGAAATGTGCTGACAGATGGGATCAGCCGTTT--AGATGTG 816
| |||| ||.|..||.| ||.|||||.|..||||.||| ||||.|
BL02373___yyc 765 A-AACAGACCGGTATAT----ACGGATGGAACAAGCCTTTTGGAGATCT- 808
BSNT_06198___ 817 AATCTAAGCCAGC-GACAGGTGCAATTCCAACAGCGCAATTTGGTGCAGA 865
|.||.|| ||.| |||||.|..|.|||||.||.|||||..|||..|.||
BL02373___yyc 809 ACTCGAA--CAACAGACAGATTAAGTTCCAGCACCGCAACCTGGAACCGA 856
BSNT_06198___ 866 GCACATCCTATCAAACAGGTGAATTAATCAAAAAGAGCCAAAAATACCTT 915
|.||.||.|||||||..||.||..|.|||||.||.|||...|||||..|.
BL02373___yyc 857 GTACTTCTTATCAAAATGGAGAGCTGATCAATAAAAGCTTCAAATATTTA 906
BSNT_06198___ 916 GAGGATACCGGAAGCTGGACGGATCACTATCAATTTTTCAATATTAATGA 965
.|.||.||.|||||||||||||||.|.||||||||||||..|.|.|||||
BL02373___yyc 907 AACGACACGGGAAGCTGGACGGATGATTATCAATTTTTCGGTTTGAATGA 956
BSNT_06198___ 966 CAGCCAGCAGCTGAGCTTCTATATCTTTATGGATCAGATCCCGGTCATTA 1015
.|..||||||.|.|.|||..||.|.||||||||||||.|.||||||.|||
BL02373___yyc 957 AAATCAGCAGATCAACTTTAATCTGTTTATGGATCAGCTGCCGGTCGTTA 1006
BSNT_06198___ 1016 ACAGCACCGCCAAA-----CCTTTCGGGGCGACATCGGCGATT--ACGGT 1058
||| |||||| ||||||||..|||||| ||||| || |
BL02373___yyc 1007 ACA-----GCCAAAACCAGCCTTTCGGAACGACAT---CGATTGAAC--T 1046
BSNT_06198___ 1059 GCAATGGGCGAATGATG--ATATTCTCAG--CTATAAGCGGCCGAATTAC 1104
.|..|||||.||..|.| ||||| | ||||||.|..||||..||
BL02373___yyc 1047 TCGCTGGGCAAACAACGACATATT----GGACTATAAACACCCGACATA- 1091
BSNT_06198___ 1105 AGTCTCGG-----AACG--AATCCGATTA--AAACAAGTGAAACAGAGCT 1145
.||||.|| |||| ||||||.|.| ||| ||| ||.|.|||..|
BL02373___yyc 1092 TGTCTTGGGCGCAAACGCAAATCCGGTCAGCAAA-AAG-GATAAAGAAAT 1139
BSNT_06198___ 1146 CATGAGCGGCAG-CGAAGTGA---GGATGCTGCTTTCGAA-ACA---AAC 1187
||||||||| || .|||.||| .|.|.|||| || ||| ||
BL02373___yyc 1140 CATGAGCGG-AGAAGAATTGATTCAGTTCCTGC-----AAGACAATGAA- 1182
BSNT_06198___ 1188 CGCTTATGATACGGACAAAATTGATCAGATCTTCCTTGCTTATCAATTGG 1237
|..|||||....||.||.|||||.||.||.||||..||.|||.||.|||
BL02373___yyc 1183 -GAGTATGACTTTGATAAGATTGAGCAAATTTTCCCCGCCTATGAAATGG 1231
BSNT_06198___ 1238 TATCAACATCA-ACCAACGATGATCCTCTCGTTGAATTGGAACCGGTTTG 1286
|.|||..|||| |..||| |.||.|||||.||..||.|.|..|||...||
BL02373___yyc 1232 TCTCAGTATCAGAGGAAC-AAGACCCTCTTGTCAAACTTGTGCCGACATG 1280
BSNT_06198___ 1287 G-GCGATGAAAGTAAATGGAA----AAATTGTGCCGATTACA---AAGGA 1328
| || ||.|||.||||.||.| ||| ||||.|..|| |||||
BL02373___yyc 1281 GTGC-ATTAAAATAAACGGTACGGTAAA----GCCGGTATCAAAGAAGGA 1325
BSNT_06198___ 1329 TTTATTGAGGAAGGAGGGGGC-TA-ACAGTGGAGTGGAATAA 1368
||.|..|..|||||| |||| || |.|.||||||||||||.
BL02373___yyc 1326 TTCAGCGGTGAAGGA--GGGCATAGAAAATGGAGTGGAATAG 1365
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