Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06197 and BL02374

See Amino acid alignment / Visit BSNT_06197 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:10
# Commandline: needle
#    -asequence dna-align/BSNT_06197___yycI.1.5803.seq
#    -bsequence dna-align/BL02374___yycI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06197___yycI-BL02374___yycI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06197___yycI-BL02374___yycI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06197___yycI
# 2: BL02374___yycI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 928
# Identity:     556/928 (59.9%)
# Similarity:   556/928 (59.9%)
# Gaps:         164/928 (17.7%)
# Score: 1377.0
# 
#
#=======================================

BSNT_06197___      1 GTGGAGTGGAATAAGACAAAATCAATCTTCATCGTTGCCTTCCTCATTTT     50
                     .||||||||||||..||||||.||||||||||..|.|.|||||||||..|
BL02374___yyc      1 ATGGAGTGGAATAGAACAAAAACAATCTTCATTATCGTCTTCCTCATCCT     50

BSNT_06197___     51 AGATATTTTCTTAGGCTATCAGTTTTTTCAAAAATGGCAGGCTACCGGCA    100
                     .|||||.||.||.|.||.|||.|..||| ||.||..||||         .
BL02374___yyc     51 TGATATCTTTTTGGCCTTTCAATACTTT-AATAAGCGCAG---------C     90

BSNT_06197___    101 AAGAATATGAAGT----CATT----AAAAAT----GATGTCGAGCATGAC    138
                     ||.|||   .|||    .|||    ||||||    |.||  .||.|.||.
BL02374___yyc     91 AACAAT---CAGTTTCCGATTTTAGAAAAATCAACGCTG--CAGGAGGAT    135

BSNT_06197___    139 ATGAAGGCCGATCATATCACGTATGAAGGC---TTGAATAAGGAAGCGAC    185
                     |||||.||.||.|||||..|.|   |.|||   |||..|||.||..||.|
BL02374___yyc    136 ATGAAAGCAGACCATATTTCAT---ACGGCAATTTGTCTAAAGAGACGTC    182

BSNT_06197___    186 AGAAGGCT-ATCGGATCACGGCAAATCAAA----AGTCTTTCTCCAAGGA    230
                     |.|||||| .|| .|||.|.|||   ||||    |||||||...|||  |
BL02374___yyc    183 AAAAGGCTCCTC-AATCTCTGCA---CAAAAGCGAGTCTTTAAGCAA--A    226

BSNT_06197___    231 G-GAAATTGAGGCGCTGAAGGATCAAAAGCCTTTGATGGACATGCCTAGT    279
                     | ||.|||.|..||.|.||.|..||||||||   ||.|| |.|   ||.|
BL02374___yyc    227 GCGAGATTAAATCGTTAAAAGGGCAAAAGCC---GAAGG-CGT---TAAT    269

BSNT_06197___    280 GATGAT----CATAAAG-TAACG---AGCCTGA-----AAATGAAGTTTG    316
                     ||  ||    || |||| .||||   .|.|.||     |||||.||||||
BL02374___yyc    270 GA--ATACCGCA-AAAGAGAACGCTTTGACAGAAATAGAAATGGAGTTTG    316

BSNT_06197___    317 CAAATCCAATCGCCCTATCAAAGAAGGATATCGAGGAC-GATGCTCAGGC    365
                     .||..||.||.||.||..|.||.|.|||||| ||.||| .|.||...||.
BL02374___yyc    317 AAACACCCATTGCGCTTCCGAAAACGGATAT-GAAGACAAAAGCAAGGGA    365

BSNT_06197___    366 ACTTGTTTCTTCGA------AAATTCAAGATGGCGAAAAATATAAGCTTT    409
                     |.|.||      ||      |.|||...||.|||.|.||.||.|||||||
BL02374___yyc    366 AATCGT------GAATGAAGAGATTATCGACGGCAATAAGTACAAGCTTT    409

BSNT_06197___    410 GGAAGGTTGATAAATC--GAAGAAAGAAATTATTTTCTTCCAAACGTACG    457
                     |||||||.|||||.||  ||  |||.|.|||.|||||||||||||.||..
BL02374___yyc    410 GGAAGGTCGATAAGTCCGGA--AAACAGATTGTTTTCTTCCAAACCTATA    457

BSNT_06197___    458 AAGGTCATTATATTTACCAAAAGACCGACAATCCCTCTAAT-ATGAT---    503
                     |.||..||||.||||..|  |.|||||.|||       ||| |||||   
BL02374___yyc    458 ATGGGAATTACATTTTTC--AGGACCGGCAA-------AATGATGATAAC    498

BSNT_06197___    504 -------CGGGC-AAGTGGTGCTGCACTTAAACGGTAAAAACGAGGTTGT    545
                            .|||| ||||.||.|||.||.|.||...|||||||||.||.||
BL02374___yyc    499 AACGAGATGGGCGAAGTCGTTCTGTACCTGAATAATAAAAACGAAGTCGT    548

BSNT_06197___    546 GTCATACGACCAGACTACGCTTGA-GACCTTCAAGCAAATTCAGAAA--G    592
                     |||.||..|.|||.|.|.|||..| ||..||.|||  ||.||| |||  |
BL02374___yyc    549 GTCTTATAAGCAGTCAATGCTGCAGGATATTAAAG--AAGTCA-AAACGG    595

BSNT_06197___    593 AAAGCTTAATTACTGAAATGGATGCGGTTG-AGCTGTTGTACTATCAAAA    641
                     |||...|.||..|||.|.|.|..||||||| |||| ||||||||.|...|
BL02374___yyc    596 AAAATCTGATCTCTGCAGTCGGCGCGGTTGAAGCT-TTGTACTACCCGGA    644

BSNT_06197___    642 TCAATTAAAAGAA-TACAGCACTGTGAA-------GAGCTGTAAATTCGG    683
                     | .|||..||||| |||||||...|.||       ||||       |.||
BL02374___yyc    645 T-TATTTGAAGAAGTACAGCAAAATTAAATCAGCCGAGC-------TTGG    686

BSNT_06197___    684 CTATGTAGCACAATATCCGCTGACAAGTACGCAGGTGCTGGCGCCGGTAT    733
                     ||||.|..|.||.|||||||||.||||..|.||..|..|.|.|||.||.|
BL02374___yyc    687 CTATTTCACGCAGTATCCGCTGGCAAGCGCTCAAATTTTCGTGCCCGTTT    736

BSNT_06197___    734 GGAGAATTACAGTCGAGTACGATAAAAAAGTGAACGG-CGAGAAAAAGAC    782
                     ||.|.||...|||.|||..|.|          ||||| |||.|||   ||
BL02374___yyc    737 GGCGGATCGAAGTGGAGCGCAA----------AACGGACGATAAA---AC    773

BSNT_06197___    783 AGTACAAGAGTATTTTACTGTGAATGCTTTGGA--GAGTACGATT-TTAG    829
                     ..|.||.||..|.||||..|||.||||...|||  |||  ||.|| ||..
BL02374___yyc    774 CATTCACGAAGAATTTATCGTGGATGCACGGGACGGAG--CGCTTCTTCA    821

BSNT_06197___    830 AT----ACAGATCAATGA----------    843
                     ||    |.|||..||.||          
BL02374___yyc    822 ATCACAAGAGAAAAAGGAAAAATCATAA    849


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