Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06195 and BL02376

See Amino acid alignment / Visit BSNT_06195 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:09
# Commandline: needle
#    -asequence dna-align/BSNT_06195___yyxA.1.5803.seq
#    -bsequence dna-align/BL02376___yyxA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06195___yyxA-BL02376___yyxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06195___yyxA-BL02376___yyxA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06195___yyxA
# 2: BL02376___yyxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1254
# Identity:     864/1254 (68.9%)
# Similarity:   864/1254 (68.9%)
# Gaps:          93/1254 ( 7.4%)
# Score: 2792.5
# 
#
#=======================================

BSNT_06195___      1 ATGGTGGA--TTACGAACGTGAGGAAGAACATACTACTCCT----GAACA     44
                        |||||  |||  |.|.|||.||.|||.|    |.||.|    |||.|
BL02376___yyx      1 ---GTGGAGTTTA--ATCATGATGAGGAAAA----ATTCGTTCGGGAAAA     41

BSNT_06195___     45 GCCAAAGAGAAGCAAAAAAGGATATTTTCTTTCGAGTCTGATTGGCGTGA     94
                     |||...||||||....|.|.|.|.|||..||||.||.|||.|.||||...
BL02376___yyx     42 GCCGGTGAGAAGTTGGAGAAGCTTTTTGTTTTCAAGCCTGGTCGGCGCCG     91

BSNT_06195___     95 TTGTCGGTGCCGTATTAATGGCGTTTATCATGCCGTACCTTTCAAATGAA    144
                     |..||||.||..|.||||..|.||||..|.|||||||.||.||..| |.|
BL02376___yyx     92 TCATCGGCGCTCTTTTAACAGTGTTTGCCTTGCCGTATCTCTCGCA-GCA    140

BSNT_06195___    145 GGGCTGGATACAGGCGCCTTAGATCAGCAGCAAAACAACAA---------    185
                     |||.|||.|      |||.|  ||.|.|.||||..||.|.|         
BL02376___yyx    141 GGGATGGCT------GCCGT--ATAATCTGCAAGTCATCGAAGCGCGCGG    182

BSNT_06195___    186 TGGCCGGGAATCA-ATCAGGACGG------------TGAAT--GTCAGTG    220
                     .||||..|.|.|| |.||||.|||            ||.||  ||||..|
BL02376___yyx    183 CGGCCAAGGAGCACAGCAGGGCGGGACGGTCCGCAATGTATCCGTCAACG    232

BSNT_06195___    221 TCAACAATGCCGTCAC-CAAGATTGTCAGCAATGTGTCGCCCGCCGTTGT    269
                     |.||.||||..||||| ||| ||.|||...||.||.||.....|.|||||
BL02376___yyx    233 TGAATAATGAAGTCACGCAA-ATGGTCTCTAAGGTTTCTGATTCTGTTGT    281

BSNT_06195___    270 CGGTGTTGTGAACATCCAAAAATCAGATATTTGG---GGAGAGAGCGGCG    316
                     |||.|||.|.|||||||||||..|||.|.|.|||   ||.||   |.|||
BL02376___yyx    282 CGGCGTTATCAACATCCAAAAGACAGGTGTATGGGATGGTGA---CAGCG    328

BSNT_06195___    317 AGGCTGGGAGC-GGCTCTGGCGTCATCTATAAGAAAAATGACAACTCCGC    365
                     |.|| ||||.| |||||.|||||.||.|||||.||..|.|.||||.|..|
BL02376___yyx    329 AAGC-GGGAACAGGCTCGGGCGTTATTTATAAAAAGGACGGCAACACATC    377

BSNT_06195___    366 TTATGTCGTGACCAACCATCATGTCATCGAAGGCGCTTCCCAAATTGAAA    415
                     ..|..|.|||||.|||||.||||||||.|||||.||.||||||||.||||
BL02376___yyx    378 CCACATTGTGACAAACCACCATGTCATTGAAGGGGCGTCCCAAATAGAAA    427

BSNT_06195___    416 TCAGCTTGAAAGACGGTTCACGTGTATCAGCTGATCTTGTCGGCAGCGAC    465
                     |||||.||||.|||||..||||..|..|.||..|.||..||||||||||.
BL02376___yyx    428 TCAGCCTGAATGACGGAACACGGATTCCGGCAAAACTGATCGGCAGCGAT    477

BSNT_06195___    466 CAGCTGATGGACCTTGCCGTTTTACGGGTGAAAAGCGATAAAATTAAAGC    515
                     .||||||||||.||.|||||..|.|..||.||.|||.|.|||||.|||||
BL02376___yyx    478 AAGCTGATGGATCTGGCCGTCCTGCAAGTCAACAGCAACAAAATAAAAGC    527

BSNT_06195___    516 AGTCGCCGATTTCGGAAATTCAGATAAAGTGAAGTCTGGCGAGCCGGTTA    565
                     ||..|||||.||.|||.||||.||||||||||||.|.||||||||.||.|
BL02376___yyx    528 AGCTGCCGAATTTGGAGATTCTGATAAAGTGAAGACAGGCGAGCCTGTCA    577

BSNT_06195___    566 TTGCGATCGGGAACCCGTTAGGCCTTGAGTTTGCAGGCTCTGTCACACAA    615
                     |.|||||.||.||||||.|.|||||..|||||.||||||||||.||||||
BL02376___yyx    578 TCGCGATTGGAAACCCGCTCGGCCTGCAGTTTTCAGGCTCTGTTACACAA    627

BSNT_06195___    616 GGCGTCATCTCAGGTACGGAGAGGGCGATCCCAGTGGATTCAAACGGTGA    665
                     ||..||||||||||.||.||..|.||..|.||.||.|||||.|||||.||
BL02376___yyx    628 GGAATCATCTCAGGAACCGAACGCGCTGTGCCGGTCGATTCCAACGGAGA    677

BSNT_06195___    666 TGGACAGCCTGACTGGAATGCAGAAGTCCTGCAAACAGATGCGGCCATTA    715
                     .||||||||.||||||||.||.|||||.|||||.||.|||||.|||||||
BL02376___yyx    678 CGGACAGCCGGACTGGAACGCCGAAGTACTGCAGACGGATGCTGCCATTA    727

BSNT_06195___    716 ACCCTGGGAACAGCGGCGGCGCTTTGTTAAATATGGATGGGAAGGTCATT    765
                     ||||.||.||||||||.||||...||||.|||||.|||||.||.|||||.
BL02376___yyx    728 ACCCGGGTAACAGCGGAGGCGGGCTGTTTAATATTGATGGAAAAGTCATC    777

BSNT_06195___    766 GGCATCAATTCAATGAAAATTGCCGAGTCGGCGGTTGAAGGGATTGGCCT    815
                     |||||.|||||.||||||||.||.||.||.||.||.|||||.||.||.||
BL02376___yyx    778 GGCATTAATTCGATGAAAATCGCTGAATCAGCCGTCGAAGGCATCGGTCT    827

BSNT_06195___    816 GTCGATTCCATCTAAGCTCGTGATCCCTGTGATAGAGGATTTAGAGAGAT    865
                     |...|||||..|.||.||.|..||.||.||.||.||.|||||.||.|..|
BL02376___yyx    828 GAGCATTCCGGCCAACCTTGCCATTCCGGTTATCGAAGATTTGGAAACGT    877

BSNT_06195___    866 ACGGAAAGGTCAAACGCCCGTTCCTTGGCATTGAGATGAAATCCCTAAGC    915
                     ||||..|.||.|.|||.||||..||.||.||||||||||||||.||..||
BL02376___yyx    878 ACGGTGAAGTGAGACGGCCGTATCTCGGAATTGAGATGAAATCACTTGGC    927

BSNT_06195___    916 GACATCGCAAGCTATCATTGGGATGAAAC-ATTAAAGCTTCCTAAGAACG    964
                     ||.|||||||||||.||.|||.|.||||| .||||| ||.||.||.||||
BL02376___yyx    928 GATATCGCAAGCTACCACTGGCAGGAAACGCTTAAA-CTGCCGAAAAACG    976

BSNT_06195___    965 TCACCAAT--GGAGTGGTTGTGATGGGTGT--AGACGCCTTTTCACCTGC   1010
                     |.||  ||  ||.||.||||||||||||||  ||.||  .|.||.|||||
BL02376___yyx    977 TAAC--ATCAGGCGTAGTTGTGATGGGTGTTCAGCCG--GTATCTCCTGC   1022

BSNT_06195___   1011 CGGAAAAGCAGGGCTGAAGGAACTGGATGTCATCACGGAATTTGACGGAT   1060
                     .||.|.|||.||.|||||.||.||.|||||||||...||||||.||||..
BL02376___yyx   1023 AGGCAGAGCCGGTCTGAAAGAGCTCGATGTCATCGTCGAATTTAACGGTG   1072

BSNT_06195___   1061 ACAAAGTAAATGATATTGTTGACCTGCGAAAACGGCTTTATCA-GAAAAA   1109
                     ||...||..|.|||||.|||||.|||||.|||..|||||| || .|||||
BL02376___yyx   1073 ACCGTGTTTACGATATCGTTGATCTGCGTAAAAAGCTTTA-CACCAAAAA   1121

BSNT_06195___   1110 AGTCGGTGACCGGGTGAAGGTGAAGTTTTAC---CGCGGCGGAAAAGAAA   1156
                     .|||||.|||..|||.||..|.||   .|||   ||.|||||||||||||
BL02376___yyx   1122 CGTCGGCGACAAGGTAAAAATCAA---ATACCTGCGGGGCGGAAAAGAAA   1168

BSNT_06195___   1157 AATCTGTAGACA-------TCAAGCTGTCCTCCGCAGACCAATTAGGCAG   1199
                            |||||       |.||||||.|  ||| |..|||||||||.||
BL02376___yyx   1169 -------AGACAACAGAAGTAAAGCTGAC--CCG-ATCCCAATTAGGAAG   1208

BSNT_06195___   1200 TTAA   1203
                     .|.|
BL02376___yyx   1209 CTGA   1212


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