Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04128 and BL02384
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_04128.1.5803.seq
# -bsequence dna-align/BL02384___hsdM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04128-BL02384___hsdM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04128-BL02384___hsdM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04128
# 2: BL02384___hsdM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1819
# Identity: 878/1819 (48.3%)
# Similarity: 878/1819 (48.3%)
# Gaps: 677/1819 (37.2%)
# Score: 1547.0
#
#
#=======================================
BSNT_04128 1 ----ATGAACAACCAAGAAATCGTTCAAA--AACTATGGAATTTATGTAA 44
.||||.||..||.||| .|..|||| |||..|| .||||||..|
BL02384___hsd 1 ATGAGTGAAAAAGTAACAAA-AGACCAAATTAACAGTG--TTTTATGGCA 47
BSNT_04128 45 TGTG----------TTACGTGATGATGGG--------ATTACCTATCAGC 76
.|.| ||| ||.||..|| |.|||.||..||.
BL02384___hsd 48 AGCGGCCGACACATTTA---GAGGAAAGGTCGATTCCAGTACATACAAGG 94
BSNT_04128 77 AATATGTA---ACAGAGTTGACCTACTTATTATTCCTCA-------AAAT 116
|.|||.|| |||..|.|| |||.||| ||.|
BL02384___hsd 95 ATTATATACTGACAATGCTG------------TTCATCAAGTATTTAAGT 132
BSNT_04128 117 GATG-----AAAGAGC---------AGGAAACAGAAG-GT-------GTG 144
|||| ||||||| ||.|.|| |||| || |||
BL02384___hsd 133 GATGCTTATAAAGAGCATTTAGAAGAGTATAC-GAAGCGTTATAATGGTG 181
BSNT_04128 145 AT----------TCCAGAAG---GATATCGATGGGATGATT--TGTTAGA 179
|| |.|| |.| |.||||.|.||.|.|.|| |||||||
BL02384___hsd 182 ATGAGCAACGTATTCA-ACGTGCGTTATCAAGGGAACGTTTTGTGTTAGA 230
BSNT_04128 180 TAAAGAAGGTTTGGAATTAAAGACATTTTATCAGCGATTGTTACTTGAAT 229
|.||.| ||.| ||||||.| |||.|||.||
BL02384___hsd 231 TGAACA--GTCT----------ACATTTGA----------TTATTTGTAT 258
BSNT_04128 230 TAGGAAGCAGCGAAAATGAACGGCTGCGTCTAAT-ATACAGTGATGCGT- 277
|||| ||||| ||| ||.|||..||..||
BL02384___hsd 259 -----AGCA---------AACGG--------AATGATGCAGAAATTGGTG 286
BSNT_04128 278 ---------CTACAAGTATTG------CTG--AGCCGAAAA-AC------ 303
.|| |||.|||| ||| |..|||||| ||
BL02384___hsd 287 AAATTATTAATA-AAGCATTGGAACGTCTGGAAAACGAAAACACAGGTAA 335
BSNT_04128 304 --TTAGAG-----------AAAATT---ATCAAATCAATTGATGCCCTTG 337
|.|||| ||.||| .|||| .|.|||.|| |
BL02384___hsd 336 GTTGAGAGGTGTCTTCCGTAACATTGACTTCAA---CAGTGAAGC----G 378
BSNT_04128 338 ATT----GGTACAATGCAAAAGAA-GAAGGTCTAGGCAA--------TCT 374
||| || ||.||||||||| ||| |.|||| |||
BL02384___hsd 379 ATTCTTGGG---AAGGCAAAAGAACGAA-----ATGCAATGCTCCGTTCT 420
BSNT_04128 375 TTATGAG-GGATTGTTA-------GAGAAGAATGCC-------------A 403
||||.|| ||||| ||| ||.|..||.||| |
BL02384___hsd 421 TTATTAGAGGATT-TTAATAAACTGACATTAAAGCCTTCTGTTGTAGGAA 469
BSNT_04128 404 GTGAAAAGAAATCAGGAGCGGGG--------CAATACTTCACACCTCGTG 445
||| ||||..|| |.|||.| ||||||.|.| |||
BL02384___hsd 470 GTG--AAGATGTC---ATCGGTGATGCTTATCAATACATGA----TCG-- 508
BSNT_04128 446 TATTAA----TTG-ATGTGAT---GGTTCAA---------------TTA- 471
|| ||| ||.|||| ||| || |||
BL02384___hsd 509 ----AACGTTTTGCATCTGATGCGGGT--AAGAAGGGCGGAGAATTTTAC 552
BSNT_04128 472 ---------ATTGACCCGAAAATTGGTGAG--CGGTGTGCTGACCCTGCA 510
||.|...||.||.| ||.|| ||...||.|.|.||
BL02384___hsd 553 ACGCCTTCTATGGCTTCGGAACT--GTTAGCACGTCTTGTTAAACC---- 596
BSNT_04128 511 GCTGGAACAT--TCGGTTTCATGATTGCTGCAGACCAATATTTAAAGAAT 558
.|.||||.|| |.||.|..||||| ||.|..|.| |.||
BL02384___hsd 597 ACAGGAAAATGATAGGGTGTATGAT---------CCGACGTGT---GGAT 634
BSNT_04128 559 CAAACAGATGACTACT--TTGATATAG--AACCACAAGAAGCTGAGTTCC 604
|| .|||.|||.|| ||..|.||| ||.|| |||.||
BL02384___hsd 635 CA---GGATCACTTCTTATTCGTGTAGCAAATCA----------AGTACC 671
BSNT_04128 605 AA--AAGAAAGAAGCCTTTGTAGGTATGGAACTTGTTAAAGATAC----C 648
|| |||||||.||| ||..||||| ||..| |||||.|| |
BL02384___hsd 672 AAATAAGAAAGTAGC-----TATTTATGG-ACAAG--AAAGAAACGGAGC 713
BSNT_04128 649 CA-----TCGTCTGGCACTCATGAAT---GCTTTGCTTCATAATATCGAA 690
|| ||.| |.|||.|.|||||| ..|||| |||..|||.| |
BL02384___hsd 714 CACGCACTCAT-TAGCATTAATGAATATGTATTTG---CATGGTATAG-A 758
BSNT_04128 691 GGACGC-----TTGGAACAAGGCGATACTTTA-----------TCGGGTA 724
.||.|| || |||...||||||||.||| ||...||
BL02384___hsd 759 CGATGCGAAAATT-GAATGGGGCGATACGTTAGCAAATCCACTTCACTTA 807
BSNT_04128 725 ACGGGAA-ATGGATGAAG--AACTTTGATGTT-------ATTTTAACAAA 764
||| ||||| ||| || |||.||| |||.||.|.||
BL02384___hsd 808 ----GAAGATGGA--AAGCTAA---TGAAGTTCCAAGCAATTGTAGCGAA 848
BSNT_04128 765 CCCGCCGTTCGGTACCAAAAAAGGCGGAGAACGGGTATCCCGCG------ 808
.||.||.|||..| |...|.|||..||.||..||.|.| |||
BL02384___hsd 849 TCCACCATTCTCT-CTTGATAAGTGGGCGATGGGCTTT---GCGGGAGAA 894
BSNT_04128 809 -------ACGA-------TTTA----------ACGTTTGAAACATCGA-A 833
|||| |||| |.|||| |.|||.| |
BL02384___hsd 895 GGAACAAACGACAGCAAGTTTAAAATGGAAGCAAGTTT---AGATCCACA 941
BSNT_04128 834 TAAACAG--TTGAAT------TTCCTGC-AGTT--------GATTTATAA 866
||.|| | ||||.| ||||..| |||| |||| |
BL02384___hsd 942 TAGAC-GTTTTGAGTGGGGTGTTCCACCAAGTTCAAAAGGAGATT----A 986
BSNT_04128 867 CGCTTT-----AAAAGATGAT------------GGAAA----TGCAAGAG 895
.||||| ||.|.|||.| ||||| |..||..|
BL02384___hsd 987 TGCTTTCGTTCAACACATGCTTTATTCATTAGCGGAAAACGGTCGAATGG 1036
BSNT_04128 896 CAGCGGTTATCTTGCCCGATAAT-GTCTTGTTT--------GAAAGCG-- 934
||.||.| ||||.|.| || ||.||.||| |.|||||
BL02384___hsd 1037 CAACGAT--TCTTCCAC----ATGGTGTTCTTTTCCGAGGGGCAAGCGAA 1080
BSNT_04128 935 GGATTGGCTCACAAATTCGTCGTGACTTGATGAACAA---------ATGT 975
|| || ||||||||| ||||| |||
BL02384___hsd 1081 GG-------CA-AAATTCGTC-----------AACAAATCATTGAGATG- 1110
BSNT_04128 976 AACTTAC---ACACGATTTTACGCTTACCAACAGGAATTTTTTATGCGCA 1022
||||||| |..||.|..|..||||||||..|||..|.|||||||
BL02384___hsd 1111 AACTTACTGGATGCGGTGATTGGCTTACCAGAAGGTCTGTTTTATG---- 1156
BSNT_04128 1023 AGGTGTAAAAAC--GAATGTCT-----TATTCTT---TACAAGGGGAACA 1062
.||| ||||..|| |||.||| |.||| |||.|
BL02384___hsd 1157 --------GAACTGGAATCCCTGCTTGTATCCTTGTGTTCAA---GAAAA 1195
BSNT_04128 1063 ACAGACCAAGATAACACG-AAGGATG-------TATGGGTATATG-ATCT 1103
|..| .||.|| ||.|||| |||.| ||| ||||
BL02384___hsd 1196 ATCG--------TACTCGTAAAGATGTTCTTTTTATTG----ATGCATCT 1233
BSNT_04128 1104 TCGGA---CAAATATGACTTCATTTGGCAAA---CGTAATCAGCTAACA- 1146
.|.|| .||.||.|| |...||.||| |..||||||||||.|
BL02384___hsd 1234 GCCGAAGGGAACTACGA----AAAAGGGAAAAATCAAAATCAGCTAAGAG 1279
BSNT_04128 1147 --------ATGGCTCA---TTTTGAACACTTCATGAAGGCATATGTAGC- 1184
||.|||.| |.||| ||||.| ||||| .|||
BL02384___hsd 1280 AACAAGACATCGCTAAAATTGTTG-ACACAT-ATGAA--------AAGCG 1319
BSNT_04128 1185 TGAAGACCGATCGAAAGTGGAAGA----TGAACGTTGGAACAAGTTTTCG 1230
||| |.||||.||.| ||.| | |.||||..|| |||
BL02384___hsd 1320 TGA--AACGATTGATA----AATACTCCT--ATGTTGCCAC----TTT-- 1355
BSNT_04128 1231 CGAGAAGAAATTGCAAAGAAGGATGACAGTCTAGATATCGGATTGATTGC 1280
|||.||||| ||||.|..|.||| .|||.|..|...|||.|
BL02384___hsd 1356 --AGATGAAAT---AAAGGAAAACGAC------TATAACCTAAACATTCC 1394
BSNT_04128 1281 TGACGAGT-CTTTATCATCATATGAAAACCTACCAGACCCTATTGAAT-- 1327
| || || |.||..|| |||.||||.| |..|||.|| |.||.||
BL02384___hsd 1395 T--CG-GTACGTTGACA-CATTTGAAGA---AGAAGAGCC-AGTGGATAT 1436
BSNT_04128 1328 -----CGGCAGAAGAGGCGATTGCGAAACTTC-AACAAGCAATGGAGTTG 1371
|||...|||||...||.|| ||||.|| |||||| .|
BL02384___hsd 1437 GCATGCGGTGAAAGAGAATATCGC-AAACATCAAACAAG---------AG 1476
BSNT_04128 1372 TTAAATGAAGTGG---------TGGAAGAATTACGTGCTGTTGAAGAGGA 1412
.||.|.||||||| ||| ||||.|| .|||||| |.|
BL02384___hsd 1477 CTACAAGAAGTGGAAGCGGAGATGG-AGAAATA------TTTGAAG-GAA 1518
BSNT_04128 1413 TGAGGTGGTCAAAAAATGA 1431
|.||| |.|..||
BL02384___hsd 1519 TTAGG-GCTGTAA------ 1530
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