Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04470 and BL02401

See Amino acid alignment / Visit BSNT_04470 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:40
# Commandline: needle
#    -asequence dna-align/BSNT_04470___ythB.1.5803.seq
#    -bsequence dna-align/BL02401___ythB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04470___ythB-BL02401___ythB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04470___ythB-BL02401___ythB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04470___ythB
# 2: BL02401___ythB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1106
# Identity:     744/1106 (67.3%)
# Similarity:   744/1106 (67.3%)
# Gaps:         121/1106 (10.9%)
# Score: 2472.5
# 
#
#=======================================

BSNT_04470___      1 ----------ATGGAGATTTCAACTGACGCTCTGATCGCCATCTCAATTA     40
                               |||||    .||||.||.||.|||.|.||.||.||.||..
BL02401___yth      1 ATGCAACTGGATGGA----ACAACAGATGCCCTGCTGGCTATTTCGATCG     46

BSNT_04470___     41 TCTGGGGCTTTGTGTTTATTTACGCCGTCATGGCGACAATGGATTTTGGA     90
                     |||||||.|||.|.|||||.||||||||.||||||.|.||||||||||||
BL02401___yth     47 TCTGGGGATTTATATTTATATACGCCGTTATGGCGTCGATGGATTTTGGA     96

BSNT_04470___     91 GCGGGATTTTGGTCTATGATCTATTTAAACAAGGAGCATATGAAGGCCAC    140
                     ||||||||||||||.|||||.|||.|.|||||..|.||..||||.||.||
BL02401___yth     97 GCGGGATTTTGGTCGATGATTTATATGAACAAAAAACAGCTGAAAGCAAC    146

BSNT_04470___    141 CGATATTGCGAATCGCTTTTTGTCCCCGACTTGGGAGGTCACAAACGTCT    190
                     |.|||||||.||.||||.|.|.||.|||||.|||||.||.||.||.||.|
BL02401___yth    147 CAATATTGCAAACCGCTATCTTTCTCCGACCTGGGAAGTAACCAATGTTT    196

BSNT_04470___    191 TTATTGTGGCCATCGTCGTGGCGCTTTTCAGTTTTTTCCCCGGCGCGACA    240
                     |.||.||.|..||||||||.||.||||||||.||||||||.||||..||.
BL02401___yth    197 TCATCGTCGGAATCGTCGTAGCCCTTTTCAGCTTTTTCCCGGGCGGCACT    246

BSNT_04470___    241 TTTGTGCTCGGCACCGTTTTATTAATTCCCGGAAGCATGATTTTACTGCT    290
                     ||||||||.||.||.||..|.||.||||||||.|||||.||||||.||||
BL02401___yth    247 TTTGTGCTGGGGACTGTGCTTTTGATTCCCGGCAGCATCATTTTATTGCT    296

BSNT_04470___    291 TTTAGCGATTCGAAGCGGATTTCTCGTGTTTTCAAATACAGCAAAGGA--    338
                     |||.||||||||||||||||||.|.||.||.||..|..|.|||||.||  
BL02401___yth    297 TTTGGCGATTCGAAGCGGATTTTTGGTCTTCTCCCACGCTGCAAAAGATT    346

BSNT_04470___    339 --GCGGAAAA---CGCTAAGATATATTTCCGGCATCTCCGGCTTTATCAT    383
                       |    |||   ||||.|..||..||||.||.|||..||||||||||||
BL02401___yth    347 ATG----AAAGGGCGCTGACTTACGTTTCAGGGATCAGCGGCTTTATCAT    392

BSNT_04470___    384 TCCTGCTATTTTAATTTTGGTGCTT-CCTGTGACACACGG----------    422
                     |||.|||.|||||||..|.|| ||| ||||||||||||||          
BL02401___yth    393 TCCGGCTGTTTTAATCCTTGT-CTTGCCTGTGACACACGGCAATTTCGTA    441

BSNT_04470___    423 ----AGGGTTTATAGAAAAAACGGATGGAATCTAT--AACTTAAATATGT    466
                         |||     |||     |||||.|..|.|.||  .||||     |||
BL02401___yth    442 TACCAGG-----TAG-----ACGGAAGCCACCAATTGGACTT-----TGT    476

BSNT_04470___    467 CTAAAATCTTTTCAAGCCCCAACGCCTATTCATTTATCGGGTTTGCGATT    516
                     | ||..|.||||.||||||..|.||||||||.|||||.||.||.||.|||
BL02401___yth    477 C-AATTTGTTTTTAAGCCCTCATGCCTATTCTTTTATGGGCTTCGCCATT    525

BSNT_04470___    517 TTAAGCACCTTATTTTTGTCCTCGCTGCTGCTTGCAGATGTTTCAAATGT    566
                     ||.||.||..|.|||.||||.||.||||||||.||.|||.||||||||||
BL02401___yth    526 TTCAGTACGCTGTTTCTGTCTTCACTGCTGCTGGCTGATTTTTCAAATGT    575

BSNT_04470___    567 GGCAGAGGAACAGGATGCGTACCGAGCCTACAGAAAAAGCGCCCTGATTA    616
                     .||.|..|||.|.||.|||||.|..|.||||.|...||.|||..|.||||
BL02401___yth    576 AGCCGGAGAAAAAGACGCGTATCAGGTCTACCGCCGAAACGCTTTAATTA    625

BSNT_04470___    617 CCGGCCCGATTTCAC------TGTTGTTTGCAGTATGCATTATGGTGACA    660
                     ||||.|||.|..|||      |||.|||  ||    ||||.|||.||||.
BL02401___yth    626 CCGGGCCGCTCGCACTGCTCATGTCGTT--CA----GCATCATGATGACC    669

BSNT_04470___    661 ATGCGGAATGAAGCAAACTGGCTGTACAGCGGAATGATGAATGATTTTAC    710
                     |||.|||..|||||.|.||||||.||.|....|||||||.|.|...||.|
BL02401___yth    670 ATGAGGACGGAAGCCAGCTGGCTTTATACAAAAATGATGGACGGGCTTCC    719

BSNT_04470___    711 TTGGATTATTGCATCGT------------TCATCACATTTGTCATTGCTG    748
                     .|||.|.|||..|||||            ||.||.||||||         
BL02401___yth    720 ATGGCTGATTTTATCGTTTTTGCTGTTTCTCGTCGCATTTG---------    760

BSNT_04470___    749 GAATC-GCTCTTTTTCTGCCTAACAAAAGCTTTGGGCAAAACA-------    790
                         | |||||.||||||||.||||         |.||.||||       
BL02401___yth    761 ----CGGCTCTGTTTCTGCCAAACA---------GACATAACAGCGACCG    797

BSNT_04470___    791 --TCGGAAAACCGCGTCTCGCACTTGTTGCGATTGGGATACAGTATTTTC    838
                       |.|||||.|||||.||.||..|..|.||.|||..|.|.|||||||||.
BL02401___yth    798 GCTGGGAAAGCCGCGCCTGGCTGTCATCGCCATTACGCTGCAGTATTTTA    847

BSNT_04470___    839 TCGCAAGCTACGCGTACGGGCGGGCGCATCTTCCGTATATGATTTATCCC    888
                     ..||.|||||.|.|||||||.|||||||.|||||.||.|||.|.|||||.
BL02401___yth    848 CGGCGAGCTATGTGTACGGGAGGGCGCACCTTCCTTACATGGTCTATCCT    897

BSNT_04470___    889 GATGTGAC-AGTCATGTCAGGCTTCACAGAGCCAGCAACGTTCAGAGCGC    937
                     |||||.|| |.||| .||.||||||||.|..||.|..||.|||||.||||
BL02401___yth    898 GATGTCACGATTCA-ATCGGGCTTCACCGCACCGGAGACATTCAGGGCGC    946

BSNT_04470___    938 TGTTTGCA--ACGTATATCGTTGCATTTATCATTCTATTTCCGGGCTTCT    985
                     ||||  ||  .|.||.|||||.|..|||||.|||.||||.||.|||||.|
BL02401___yth    947 TGTT--CATCTCCTACATCGTCGGTTTTATTATTTTATTCCCCGGCTTTT    994

BSNT_04470___    986 TTTTCTTCTGGAAAATGTTTATGCGAGATAAACGCTATATCCGCCAGGAG   1035
                     .||..|||||||||.||||.|||...||.||.||.||.|||...|||.|.
BL02401___yth    995 ATTATTTCTGGAAATTGTTCATGAAGGACAAGCGGTACATCAAACAGCAT   1044

BSNT_04470___   1036 GAATAG   1041
                     |||||.
BL02401___yth   1045 GAATAA   1050


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