Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00941 and BL02423
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00941___ydfL.1.5803.seq
# -bsequence dna-align/BL02423.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00941___ydfL-BL02423.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00941___ydfL-BL02423.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00941___ydfL
# 2: BL02423
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 985
# Identity: 500/985 (50.8%)
# Similarity: 500/985 (50.8%)
# Gaps: 323/985 (32.8%)
# Score: 929.5
#
#
#=======================================
BSNT_00941___ 1 ATGAAGGAATTTTTTTCGATT-------GGAGAAGTGTCAA-AGTTATTC 42
|||||..| |||||| ||||||||..||| |.|| |||
BL02423 1 ATGAACAA-------TCGATTCCGTGTAGGAGAAGTAGCAAGACTT-TTC 42
BSNT_00941___ 43 AA--TG--TGAAAATCTCTGCTCTTCGGTATTATGATGAAATCGGCCTTT 88
|| || ||.| ||..||||.||.||.||||||||||||||.||.|
BL02423 43 AAGCTGCCTGCA----TCGACTCTGCGTTACTATGATGAAATCGGGCTGT 88
BSNT_00941___ 89 TGAAACCGGAATATAAAGATGAGCAAACGAAC-TATAGGTATTATTCTAC 137
|.|..||..|.||||..|||....|||| |.| |||.|.||||||..|..
BL02423 89 TCAGGCCAAAGTATACCGATCCTGAAAC-ATCTTATCGATATTATGGTGT 137
BSNT_00941___ 138 CCAACAGTTTGAGCGGCTTGATACCATCAAGTATTTGAGGGCCCTAGGCC 187
..||||.|||.||...||.|||||.||.|..|.|||.|||
BL02423 138 TGAACAATTTCAGATCCTGGATACGATTATTTTTTTAAGG---------- 177
BSNT_00941___ 188 TGCCAATCAATAAGCTTCTTGATTTT--TATAACTCTCAAAATACAAACA 235
||.|| |.|||||| | ||| ||.|| |
BL02423 178 --------AAAAA-----TGGATTTTCGT-TAA-----AAGAT------A 202
BSNT_00941___ 236 CTCTTCTTCATTTACTAAAAAGCCAGCAGGCT---GAA--ATTGATCGCA 280
.||..|.|||.|||....|||| |.|| ||| |..||| |.|
BL02423 203 TTCAGCATCAGTTAGATCAAAG------GACTCCGGAAACAACGAT-GGA 245
BSNT_00941___ 281 AA-----AAGAAAGAA--TT--GGAACGCATCGAAC-GAAAGATCTC--- 317
|| |||||| || || ||||..|| ||.| ||||..|.||
BL02423 246 AATTTTGAAGAAA-AAGCTTGAGGAAGTCA--GAGCGGAAATTTTTCGTC 292
BSNT_00941___ 318 -CCGACGCATCACACATATAGAAGATGCCGTTAACATGCCGTTACATCAA 366
||.||||| ||.|....|||| .||..|||| ||
BL02423 293 TCCAACGCA--ACGCGGCGAGAA----TCGAGAACA------------AA 324
BSNT_00941___ 367 ATTTCAAAAATC------------AAACTTCCCGCA-ATGCGTGTGGCTT 403
|||||.|.|||| ||||||.|||.| ||.| .||||
BL02423 325 ATTTCCACAATCGAAGAAGGAATAAAACTTGCCGAACATCC----TGCTT 370
BSNT_00941___ 404 --AC-TTGCAGCATGAATATGTTCTC------GGCCATGATATCGAACAT 444
|| ||.|||.|| |||.| |||.|| |
BL02423 371 TAACATTTCAGTAT-------TTCCCAAAACGGGCTAT-----------T 402
BSNT_00941___ 445 TCGTTAGCTGAA--TTGAGAACCC-----ACCTGAATGTA--AA--CGA- 482
|| .||.|||.| ||||.||.|| ||||| |||.| || |||
BL02423 403 TC-CTACCTGTATTTTGACAAGCCTGTCGACCTG-ATGGAGGAAGGCGAC 450
BSNT_00941___ 483 -AGATATATTCATAGG--CAAG-ATCGGTTT--ATCCATTTCTGCAGCAA 526
|.||.||||.|.||| .||| |.||.||| |.|||.| |.|
BL02423 451 GACATTTATTTAAAGGATAAAGAAACGCTTTCAAGCCAGT-------CGA 493
BSNT_00941___ 527 ATGTGAAAGCAAAACAGTTT----------GACA----AATATTCCAGT- 561
.|| ||.|.|||.|.|| |||| ||.|.|| ||
BL02423 494 TTG----AGAATAACGGCTTCTTCACCGGAGACATTGGAACAATC--GTT 537
BSNT_00941___ 562 -ATATTTATGATTCTTGAAG-ATGAA--AATG--AAAAAACTTC------ 599
||||..| || .||||||| |.||| |..| ||||.|..||
BL02423 538 GATATGGA-GA-GCTTGAAGCAAGAAGGACCGGTAAAATATATCGGCGTA 585
BSNT_00941___ 600 -TTCAGAAATCATCTTTCCTTCAAGA-GAATATC--TGCAAATTAGGTTT 645
|| ||| ||.||.||.|| |||.| | ||.|.|.|| |||
BL02423 586 TTT--GAA-------TTGCTGCACGAGGAAGA-CAGTGAAGACTA--TTT 623
BSNT_00941___ 646 A----AAGGGTCACATCCAGA---AGCCGAACCATA-------CTAC--- 678
| ||||||...||.| || |.|| ||||| ||||
BL02423 624 AAACGAAGGGTTGTATGC-GAGTTACCC---CCATATTGGTCCCTACGAG 669
BSNT_00941___ 679 --------AAAAAATTA----CTGGCATATA-------TGAAAGAACATC 709
.||||.||| ||.| .|.|| |||||||..|..
BL02423 670 GACATCAGGAAAAGTTATCAGCTCG-TTTTAAGCCAGCTGAAAGAGAAGG 718
BSNT_00941___ 710 ATTATGAGGTAGCAGGGGA--CTCAATTGAAATCACACTCATTGATTATG 757
|.||.|||.|.|| |||| |.|..||||||||.||.|..|||||.|||
BL02423 719 AATACGAGCTGGC--GGGAATCCCTGTTGAAATCTCATTTCTTGATGATG 766
BSNT_00941___ 758 ------GCATTACGAATAACCTAGATAATTACGTGACTGAAATCCTGCTG 801
.|| |.||.|.|.||.| |||.||.|||..|||||
BL02423 767 CTGTGATCA--AGGAGTCAGCTCG----TTATGTCACTTTAATCC----- 805
BSNT_00941___ 802 CCCATTAAA------TAA----------------- 813
||| |||
BL02423 806 ------AAATTCCGGTAACAAAGAGTTTTGATTGA 834
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