Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05475 and BL02439
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05475___rbsK.1.5803.seq
# -bsequence dna-align/BL02439___rbsK.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05475___rbsK-BL02439___rbsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05475___rbsK-BL02439___rbsK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05475___rbsK
# 2: BL02439___rbsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 930
# Identity: 615/930 (66.1%)
# Similarity: 615/930 (66.1%)
# Gaps: 129/930 (13.9%)
# Score: 1979.0
#
#
#=======================================
BSNT_05475___ 1 ---------------------------------ATGGATTTAGTAGTCAC 17
|||||||||||.||.||
BL02439___rbs 1 ATGAGTAAAATATGCGTGATCGGCAGCTCTTCGATGGATTTAGTCGTGAC 50
BSNT_05475___ 18 CTCGGACAAACGCCCAAAAGCCGGTGAAACGGTTCTTGGCACGTCATTTC 67
.|||..|||.||.||....|||||.||||||||.||||||...||.|||.
BL02439___rbs 51 ATCGCCCAAGCGGCCGGCCGCCGGAGAAACGGTGCTTGGCGAATCTTTTA 100
BSNT_05475___ 68 AGACTGTGCCGGGCGGCAAAGGAGCAAATCAGGCCGTTGCCGCAGCAAGA 117
|.||.||.||||||||.||.||.||.||.||.||.||.|||||.||..|.
BL02439___rbs 101 AAACGGTTCCGGGCGGAAAGGGGGCCAACCAAGCGGTAGCCGCGGCCCGG 150
BSNT_05475___ 118 CTTGGGGCGCAAGTGTTTATGGTCGGCAAGGTTGGAGACGATCATTATGG 167
|||||.||..|.||...||||.|||||...||.||.||.||||||||.||
BL02439___rbs 151 CTTGGCGCCGAGGTCCATATGATCGGCTGCGTCGGCGATGATCATTACGG 200
BSNT_05475___ 168 AACAGCTATATTGAATAATCTCAAAGCTAACGGCGT-TTGCACTGACTAT 216
.|.|||.||..|..|.|||.|..||||.||.||.|| ||| ||.||||||
BL02439___rbs 201 GAAAGCCATCCTCGACAATTTTCAAGCCAATGGTGTCTTG-ACAGACTAT 249
BSNT_05475___ 217 ATGGAACCGGTTACACATACGGAAAGCGGAACCGCTCATATTGTGCTTGC 266
.||||||||||||||..|..|||||||||||||||.|||||.||.||.||
BL02439___rbs 250 GTGGAACCGGTTACAGGTCAGGAAAGCGGAACCGCACATATCGTTCTCGC 299
BSNT_05475___ 267 TGAAGGTGACAACAGCATTGTCGTTGTCAAAGGCGCGAACGATGACATCA 316
.||.||.||||||||||||.||||.||||||||.||.||.||..|..|||
BL02439___rbs 300 AGACGGCGACAACAGCATTATCGTCGTCAAAGGGGCAAATGACCATGTCA 349
BSNT_05475___ 317 CCCCAGCGTATGCGTT--AAAAGCGCT---TGAACAGATTGAAAAGGTCG 361
|.|| .|.||.|||| ||||||||| || .||||.||.|||..|
BL02439___rbs 350 CACC--TGAATACGTTCAAAAAGCGCTGCCTG---CGATTAAACAGGCAG 394
BSNT_05475___ 362 ATATGGTGCTGATTCAGCAGGAAATCCCAGAAGAAACGGTTGATGAGG-- 409
|.||.||.||||||||||||||.||.||.||||||||.||.|||.|.|
BL02439___rbs 395 ACATCGTTCTGATTCAGCAGGAGATTCCGGAAGAAACCGTCGATTATGTC 444
BSNT_05475___ 410 -------TGTGCAAATACTGCCATTCTCTCGATATCCCGATCATGCTAAA 452
|||||| || |||||||..||.||..||.||||.||
BL02439___rbs 445 AGCGGACTGTGCA------GC---TCTCTCGGCATTCCTCTCCTGCTGAA 485
BSNT_05475___ 453 CCCGGCACCGGCCCGCCCGCTCAAG-CAGGAAACCATTGATCACGCCACC 501
.||||||||.|||||.||||| |.| |.||||||..|.||.|||||..||
BL02439___rbs 486 TCCGGCACCAGCCCGTCCGCT-ACGCCCGGAAACGGTCGAACACGCGGCC 534
BSNT_05475___ 502 TATCTGACGCCGAATGAACACGAGTCTTCGAT----TTT------AT-TC 540
||..|.|||||.||.||.||.||..|||||.| ||| || ||
BL02439___rbs 535 TACATCACGCCAAACGAGCATGAAGCTTCGGTACTGTTTCAGGGCATGTC 584
BSNT_05475___ 541 CC-TGATCTTACCACTTCTGAAGC--TCTGGCGCTTTATCCGGCAAAGCT 587
|| .|| .||||| |...|||| |||||||..|||||
BL02439___rbs 585 CCGGGA------------GGAAGCGTTAAAGCGC--TATCCGGAGAAGCT 620
BSNT_05475___ 588 CTTTATTACGGAAGGAAAACAAGGCGTCCGCTAT-----TCGGCTGGCAG 632
.||.||.||.|||||.|||.|.|||||||||||| |.|.||||
BL02439___rbs 621 GTTCATCACAGAAGGGAAAAACGGCGTCCGCTATCACAATGGTCTGG--- 667
BSNT_05475___ 633 CAAAGAA-GTGCTCATCCCGTCCTTCCCTGT---TGAGCCCG-TTGATAC 677
||||| ||| ||.|.||.||.|||||||| || || |||||||
BL02439___rbs 668 --AAGAACGTG-TCGTTCCTTCATTCCCTGTCAATG----CGATTGATAC 710
BSNT_05475___ 678 AACCGGAGCCGGTGATACGTTTAACGCAGCATTTGCCGTGGCCCTGGCTG 727
.||.||.|||||.||.||.||.||.||.|.|||||||||.||.||..|.|
BL02439___rbs 711 GACGGGCGCCGGAGACACCTTCAATGCGGGATTTGCCGTCGCGCTTTCCG 760
BSNT_05475___ 728 AGGGA-AAAGATATTGAAGCCGCATTGCGGTTTGCCAATCGAGCGGCTTC 776
|.||| |||| .||.|||.|.||.|||||.|||||.||.||.||||||||
BL02439___rbs 761 AAGGACAAAG-CATCGAATCTGCCTTGCGCTTTGCGAACCGGGCGGCTTC 809
BSNT_05475___ 777 CCTTTCTGTCTGTTC----CTTCGGTGCCCAAGGCGGAATGCCGACAAGA 822
| |||||.|||| .|||||.||.||||||||.|||||.|.|.|.
BL02439___rbs 810 C----CTGTCGGTTCTGAAATTCGGCGCACAAGGCGGCATGCCAAAACGG 855
BSNT_05475___ 823 AATGAAGTAGAGGAGC-TG--CTGTCATGA 849
.||||||| ||||| || |||||||||
BL02439___rbs 856 GATGAAGT---GGAGCGTGAACTGTCATGA 882
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