Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05489 and BL02444

See Amino acid alignment / Visit BSNT_05489 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05489___alsR.1.5803.seq
#    -bsequence dna-align/BL02444___alsR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05489___alsR-BL02444___alsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05489___alsR-BL02444___alsR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05489___alsR
# 2: BL02444___alsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 987
# Identity:     612/987 (62.0%)
# Similarity:   612/987 (62.0%)
# Gaps:         186/987 (18.8%)
# Score: 1854.5
# 
#
#=======================================

BSNT_05489___      1 ATGGAGCTTCGCCATCTTCAATACTTTATCGCAGTAGCCGAAGAGCTTCA     50
                     ||||||||.||||||||||..||.|||||.|..||.||||||||.||.||
BL02444___als      1 ATGGAGCTGCGCCATCTTCGTTATTTTATGGTTGTTGCCGAAGAACTGCA     50

BSNT_05489___     51 TTTCGGAAAGGCTGCCCGGCGGCTGAACATGACGCAGCCTCCTCTCAGCC    100
                     |||||||||.||.||.|..||||||||||||||.||||||||.|||||||
BL02444___als     51 TTTCGGAAAAGCAGCTCTTCGGCTGAACATGACTCAGCCTCCGCTCAGCC    100

BSNT_05489___    101 AGCAGATCAAACAGCTGGAGGAA--GAAGTCGGAGTTACGCTT-CTGAAA    147
                     |||||||.||||||||  ||.||  |||.|.||.||.|| ||| |||||.
BL02444___als    101 AGCAGATTAAACAGCT--AGAAAGTGAAATAGGCGTCAC-CTTGCTGAAG    147

BSNT_05489___    148 AGGACAAAACGATTTGTCGAGCTTACCGCAGCAGGAGAAATCTTTTTAAA    197
                     |||.|||||.||...|||..|||.||.||.|||||.|...||||||||||
BL02444___als    148 AGGTCAAAAAGAGCCGTCAGGCTAACGGCGGCAGGCGGGGTCTTTTTAAA    197

BSNT_05489___    198 TCATTGCCGCATGGCCTTGATGCAAATC--GGACAAGGA---------AT    236
                                          .||||||  ||  |||||         ||
BL02444___als    198 ---------------------ACAAATCAAGG--AAGGACTTTCCCAGAT    224

BSNT_05489___    237 TGAAC------------TGGCACAGCGGACGGCCCGCGGCGAGC----AA    270
                     |||.|            ||||.|||||||||||||||||.||||    ||
BL02444___als    225 TGATCAGGCCGTCGACATGGCTCAGCGGACGGCCCGCGGGGAGCTGGGAA    274

BSNT_05489___    271 GGCCTTCTCGTAATCGGTTTTGTCGGATCAGCTACATATGAATTTCTGCC    320
                     |    .|||||.|||||.||||||||.||.||.|||||.||..|..||||
BL02444___als    275 G----ACTCGTGATCGGCTTTGTCGGCTCCGCAACATACGAGATCATGCC    320

BSNT_05489___    321 GCCGATTGTCCGGGAATATCGTAAAAAA----TTCCCATGTGTGAAAATA    366
                     .||.||..||.|||||||.||    |||    |||||.|..|||.|.||.
BL02444___als    321 TCCCATCATCAGGGAATACCG----AAACCGGTTCCCGTCCGTGCAGATC    366

BSNT_05489___    367 GAACTGCGTGAAATATCCTCGTCTAGGCAGCAAGAGGAGCTACTAAA-GG    415
                     ||.||.||.||..|.||..|..|.|..|||...||.|..||.||||| ||
BL02444___als    367 GATCTTCGGGAGCTTTCAACCCCCAATCAGATCGATGCACTGCTAAACGG    416

BSNT_05489___    416 GCAACATTGATATTGGTATACTTCATCCTCCCTT------------ACAG    453
                     || |.|||||.||.||..|.||.|||||.||.||            ||.|
BL02444___als    417 GC-ATATTGACATCGGGGTGCTGCATCCCCCGTTGGGAAACGACGAACTG    465

BSNT_05489___    454 ----CATACAGCTTTACATATCG---AAACCGCCCAAAGCAGCCCTTGTG    496
                         ||||||           ||   |||      |||  ||||.|||||
BL02444___als    466 AAGTCATACA-----------CGGTAAAA------AAA--AGCCATTGTG    496

BSNT_05489___    497 TTTTAGCTTTGCCTAAGCAACACCCATTGACTTCTAAGGAATCAA-----    541
                     |..|.||..|.||.||.||.|||||.|||||     ||.||  ||     
BL02444___als    497 TCCTTGCACTTCCAAAACACCACCCGTTGAC-----AGAAA--AAGCCCG    539

BSNT_05489___    542 -TTACGATTG-AGGAT-TTAAGAGATGAACCAATTATTACTG-------T    581
                      .|||..||| ||||| ||.| |||.||       ||..|||       |
BL02444___als    540 GGTACATTTGAAGGATCTTGA-AGAAGA-------ATCGCTGATCGTCAT    581

BSNT_05489___    582 TGCTAAAGAAGCATGGCCTACTCTATACATGGATTTTA--TTCAGTTCTG    629
                     |||.||||||||.|||||..||.||||||.|||.||.|  |||  ||.||
BL02444___als    582 TGCCAAAGAAGCGTGGCCCTCTTTATACACGGAATTCAATTTC--TTGTG    629

BSNT_05489___    630 TGAACAAGCGGGCTTCAGACCCAACATTGTCCAGGAAGCCACAGAATATC    679
                     ||||.||||.||.||.|..||||||||.|.|||||||||.||||||||.|
BL02444___als    630 TGAAAAAGCCGGATTTATCCCCAACATCGCCCAGGAAGCTACAGAATACC    679

BSNT_05489___    680 AAATGGTGATTGGTTTAGTCAGC-GCCGGAATTGGTATGACATTTGTTCC    728
                     ||||||||||.||..|.|| |.| ||||||||.||.||..|..|.||.||
BL02444___als    680 AAATGGTGATCGGCCTCGT-ATCGGCCGGAATGGGAATCGCCGTCGTGCC    728

BSNT_05489___    729 TTCCTCAGCCAAAAAATTATTTAATTTGGATGTTACTTATCGAA--AAAT    776
                     |.|..|.||.|||..|||||||||..|.||||||  .|||..||  ||||
BL02444___als    729 TACGGCGGCTAAACGATTATTTAACCTTGATGTT--GTATACAAAGAAAT    776

BSNT_05489___    777 GGACCAAATACAGCTTAATGCCGAATGGGTTATCGCTTACCGCAAAGACA    826
                     .||..|..|.|..|||...|||||||||.|||.|||..|.||.||.||||
BL02444___als    777 CGAAGACTTTCCCCTTCGCGCCGAATGGATTACCGCACATCGAAAGGACA    826

BSNT_05489___    827 ATCATAATCCG---CTTATAAAGCATTTTATTCATATTTCAAATTGTCAG    873
                     |.|..||||||   |||   ||||||||.||..|.||.|||.|   |||.
BL02444___als    827 ACCGCAATCCGGCACTT---AAGCATTTCATCGAAATCTCAGA---TCAA    870

BSNT_05489___    874 CAGACA-AGAACTAAAGAGAGTGATGCAGGTACATGA    909
                     ||..|| ||                            
BL02444___als    871 CACTCATAG----------------------------    879


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