Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05546 and BL02450

See Amino acid alignment / Visit BSNT_05546 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:40
# Commandline: needle
#    -asequence dna-align/BSNT_05546___ywpF.1.5803.seq
#    -bsequence dna-align/BL02450___ywpF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05546___ywpF-BL02450___ywpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05546___ywpF-BL02450___ywpF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05546___ywpF
# 2: BL02450___ywpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 455
# Identity:     285/455 (62.6%)
# Similarity:   285/455 (62.6%)
# Gaps:          85/455 (18.7%)
# Score: 843.0
# 
#
#=======================================

BSNT_05546___      1 ATGAAAACCTTTAAACTGGTTGACCTGAATGTGGAACGAGTGGACAAGGA     50
                     |||||||||||||..||..||||..|.||..|.|..||      |.||||
BL02450___ywp      1 ATGAAAACCTTTAGGCTTATTGATTTAAAAATTGTCCG------CCAGGA     44

BSNT_05546___     51 AGAACA-ATCAA------TCGAACAGTTTCCCCTTATTGACGGACTGATT     93
                     .| ||| .||||      |.||..||||.||.||.||.|||||.||.||.
BL02450___ywp     45 TG-ACACTTCAAAGCGGCTTGAGGAGTTCCCGCTGATCGACGGCCTTATC     93

BSNT_05546___     94 ATAAATAAAGAAGACGGTGAAAATCACTGGCTGATTGAGGCGCTTGTACA    143
                     ||.|||||.||||||||.|||||.||||||.||.||||.|..||.||...
BL02450___ywp     94 ATTAATAAGGAAGACGGAGAAAACCACTGGATGGTTGAAGGTCTGGTTTC    143

BSNT_05546___    144 GAAAGAACATCTGTCTTTTTTTGAACAGCTTCT--AAACAGCCAATCTGA    191
                     .||||||.|.|.||.||||||.|||.|.||.||  |...||.|||  .||
BL02450___ywp    144 TAAAGAATACCGGTATTTTTTCGAATATCTCCTTCAGGAAGGCAA--AGA    191

BSNT_05546___    192 AGCCAAAGTATTTGTAACGATCACGAAAAAAAGCAATCGCCCCGCCCAGC    241
                     ||..||||.||.||||||||||||||||||||||||.|||||.||.||||
BL02450___ywp    192 AGTGAAAGCATATGTAACGATCACGAAAAAAAGCAACCGCCCAGCACAGC    241

BSNT_05546___    242 TGACAGC--AGCAGTGAAAAATATC---GTCAAGCTGGAAGAAAGCATCC    286
                     ||..|||  ||  ||.|||||.|||   ||   |||.|  |..|||||  
BL02450___ywp    242 TGTTAGCGAAG--GTCAAAAACATCACGGT---GCTCG--GCGAGCAT--    282

BSNT_05546___    287 AGGTTTTACTCT--ATGGAC----AAATGGTCA---CAA-------GAAA    320
                       ||||...|||  .|||||    |||||||||   |||       ||||
BL02450___ywp    283 --GTTTCCGTCTTATTGGACGGCAAAATGGTCAGCTCAAAGCTGAGGAAA    330

BSNT_05546___    321 ACAGCAGGGCACTGAAACCATTCTCGAGTCCCTTG----------TAAAA    360
                            |||.|.||.|..|||          |||          |.|||
BL02450___ywp    331 -------GGCTCCGACAAGATT----------TTGGAAGATTTAATGAAA    363

BSNT_05546___    361 GAGGGCTATACAGGAACAAAA----CTCATTGAAGCATTTAAGCAAAAGT    406
                     ||.||.|||.|.||    |.|    ||..|||||||||||||||||||..
BL02450___ywp    364 GAAGGATATTCCGG----AGATCGGCTTCTTGAAGCATTTAAGCAAAATA    409

BSNT_05546___    407 TATAA    411
                     |||||
BL02450___ywp    410 TATAA    414


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