Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05577 and BL02453

See Amino acid alignment / Visit BSNT_05577 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05577___ywoA.1.5803.seq
#    -bsequence dna-align/BL02453___bcrC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05577___ywoA-BL02453___bcrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05577___ywoA-BL02453___bcrC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05577___ywoA
# 2: BL02453___bcrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 648
# Identity:     375/648 (57.9%)
# Similarity:   375/648 (57.9%)
# Gaps:         135/648 (20.8%)
# Score: 927.0
# 
#
#=======================================

BSNT_05577___      1 TTGAACTA----CGAAATTTTTA-AAGCAATCCATGGACTATCTCATCAC     45
                     ||||||||    |    |||||| |.|| ||.|||..|.||.|..|.|||
BL02453___bcr      1 TTGAACTATTGGC----TTTTTACACGC-ATTCATCAATTAGCAAACCAC     45

BSNT_05577___     46 AA-TTCAGTTCTCGATTCCATTATGGTCTTCATAACGGAATATGCCAT--     92
                     || ..|| |.||.|||..|...|||.|.||.||.||.|||.|.||.||  
BL02453___bcr     46 AACGACA-TCCTGGATGGCGCCATGATTTTGATTACAGAAAAAGCGATTT     94

BSNT_05577___     93 -TATCGCCTATGC---CCTTATCCTATTGGCAATCTGGCTGTTTGGGAAC    138
                      |||   .|||||   |.||.|.||.|||   ||||||.|.||.||.|||
BL02453___bcr     95 ATAT---GTATGCGCTCATTTTGCTTTTG---ATCTGGATATTCGGAAAC    138

BSNT_05577___    139 AC------ACAAAGCAGAAAACATGTGCTATACGCAGGCATCACAGGAAT    182
                      |      |.|||    |.||| .||.||..|.||.||..|.||.||.||
BL02453___bcr    139 -CGTTCTTATAAA----ATAAC-CGTTCTTCAGGCCGGTGTGACGGGTAT    182

BSNT_05577___    183 TGCAGGCCTTGTGAT-------CAACTATTTGATTACGCTTGTTTATTTC    225
                     |       ||..|||       .||.||||||.|..|..|.|||||.|..
BL02453___bcr    183 T-------TTCGGATTGGCGGCAAATTATTTGCTGTCATTGGTTTACTAT    225

BSNT_05577___    226 GAACCGCGCCCGTTCGTTGCGCATACA-GTGCATACACTGATTCCGCATG    274
                     ||.|||.|.||.||.||.||.||| || |||.|...|.||||||..||||
BL02453___bcr    226 GAGCCGAGGCCATTTGTCGCTCAT-CATGTGGACGTATTGATTCACCATG    274

BSNT_05577___    275 CTGCGGATGCTTCATTTCCAAGTGACCACACGACAGGCGCATTAGCGATT    324
                     ||||.||.||.||||||||.||.||.||.||.||.||.||.|||||.|||
BL02453___bcr    275 CTGCCGACGCCTCATTTCCCAGCGATCATACAACCGGGGCGTTAGCCATT    324

BSNT_05577___    325 TCTATTGCGAT---GCTTT-TCAGAAACCGCAAAATCG---GCTGGCCGC    367
                     ||.||.||..|   ||||| ||    |.||.|||||.|   ||||.|.|.
BL02453___bcr    325 TCGATCGCTTTTTGGCTTTATC----ATCGGAAAATTGGAAGCTGCCTGA    370

BSNT_05577___    368 TTGTCATTTTTGGGCTTTTGACAGGCTTTTCGAGAATTTGGGTGGGACAT    417
                     |||   .|||.|||.|.|||||.||||||||..|.||||||||.|||||.
BL02453___bcr    371 TTG---CTTTCGGGTTATTGACGGGCTTTTCCCGTATTTGGGTCGGACAC    417

BSNT_05577___    418 CACTATCCGGTAGATGTATTGGGCAGCCTCGTTATCGCCATCATTATCGG    467
                     |||||.||.||.||.||||||||||||.|..|..|||    |.||||..|
BL02453___bcr    418 CACTACCCTGTTGACGTATTGGGCAGCATTTTGGTCG----CTTTATTCG    463

BSNT_05577___    468 GTTC----CTTTTCTTTAGATTTTCAGATCTGCTTCGCCCGTTCGT----    509
                     ..||    .||.|.||||||||.||            |.|||..||    
BL02453___bcr    464 TATCACTTGTTATGTTTAGATTCTC------------CACGTATGTGCAG    501

BSNT_05577___    510 -CGATTTGGTCGTGA--GGA---------TCTATGAAGCCATTATCAAT-    546
                      ||.|||    .|||  |||         |||||||       |||.|| 
BL02453___bcr    502 CCGCTTT----TTGAACGGATCATTTCACTCTATGA-------ATCGATC    540

BSNT_05577___    547 ------AAACTGACGAAAA-----AACCA-ACCGATCAAAATTTCTAA    582
                           |||.|| ||.|||     |.||| |.||.|..||        
BL02453___bcr    541 TTGCGGAAATTG-CGGAAAGCGGTATCCAGAACGGTATAA--------    579


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