Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03293 and BL02470

See Amino acid alignment / Visit BSNT_03293 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence dna-align/BSNT_03293___kdgA.1.5803.seq
#    -bsequence dna-align/BL02470___kdgA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03293___kdgA-BL02470___kdgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03293___kdgA-BL02470___kdgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03293___kdgA
# 2: BL02470___kdgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 653
# Identity:     400/653 (61.3%)
# Similarity:   400/653 (61.3%)
# Gaps:         100/653 (15.3%)
# Score: 1034.0
# 
#
#=======================================

BSNT_03293___      1 ATGGAGTCCAAAGT---TGTT--GAAAACCGT----------CTGAAAGA     35
                     |||||    ||.||   ||.|  |||||  ||          |||...||
BL02470___kdg      1 ATGGA----AATGTCTATGATCGGAAAA--GTGCAAGAGCAGCTGGGCGA     44

BSNT_03293___     36 AGCAAAGCTGATTGCAGTCATTCGTTCAAAGGATACACAGGAGGC--CTG     83
                     .||...||||||.||||||.|.||..||.|.|.||   |||||||  |||
BL02470___kdg     45 GGCCGGGCTGATCGCAGTCGTCCGCGCAGACGGTA---AGGAGGCTGCTG     91

BSNT_03293___     84 TCAGCAG---ATTGAGAGTTTGTTAGATAAAGGGATTCGTGCAGTTGAAG    130
                       ||.||   |||.|.||..||.|.||.|||||||||..|||..|||||.
BL02470___kdg     92 --AGGAGACCATTCACAGACTGATCGACAAAGGGATTACTGCGATTGAAA    139

BSNT_03293___    131 TGACGTATACAACCCCCGGGGCATCAGATATTATCGAATCCTT--CCGTA    178
                     |.||.|||||.||.||.||.||.||.||..|.||.|||...||  |.|.|
BL02470___kdg    140 TCACATATACGACGCCGGGAGCGTCTGAGCTGATTGAAAAATTTGCGGGA    189

BSNT_03293___    179 ATAGGGAAGATATTTTAATTGGCGCGGGCACTGT-CATCACCGCGCAGCA    227
                     |.|  ||.|.|.||.|..|.||.|||||.||.|| ..|.|..||| |.||
BL02470___kdg    190 AAA--GACGGTCTTCTTGTCGGAGCGGGAACGGTGGTTGAAAGCG-AACA    236

BSNT_03293___    228 AGCTGGGGAAGCTGCTGAGGCTGGCGCGCAGTTTATTGTCAGTCCGGGTT    277
                     .||..|||||||.||.|..||.||..|..|.|||||.|||||.|||||||
BL02470___kdg    237 GGCGAGGGAAGCCGCGGCAGCGGGGTCAAAATTTATCGTCAGCCCGGGTT    286

BSNT_03293___    278 TTTCAGCTGAT--CTTGCTGA-------ACATCTATCTTTTGTAAAGACA    318
                     ||||.|  .||  ||.|||||       .|||| ||      |..|.|||
BL02470___kdg    287 TTTCGG--AATCACTGGCTGAGGAGGCCGCATC-AT------TGCATACA    327

BSNT_03293___    319 CATTATATCCCCGGCGTCTTGACTCCGAGCGAAATTATGGAAGCGCTGAC    368
                     ..||.|||.||||||||.||.||.||.||||||||||||||||||.|..|
BL02470___kdg    328 TTTTTTATTCCCGGCGTATTAACGCCAAGCGAAATTATGGAAGCGGTCTC    377

BSNT_03293___    369 A-------TTCGGTTTTACGACATTAAAGCTGTTCCCAAGCGGTGTGTTT    411
                     |       |||||.||       .|.||||||||.|||.|.||....|..
BL02470___kdg    378 AAAGGGTTTTCGGGTT-------CTTAAGCTGTTTCCAGGGGGAACATCC    420

BSNT_03293___    412 GGCATCCCGTTTATGAAAAATTTAGCGGGTCCTTTCCCGCAGGTGACCTT    461
                     ||.||.||.|..|||||.||..|.||.||||||||.|||.||||....||
BL02470___kdg    421 GGGATTCCTTACATGAAGAACCTCGCCGGTCCTTTTCCGAAGGTTCGGTT    470

BSNT_03293___    462 TATTCCGACAGGCGGGATACAT-CCGTCTGAAGTGCCGGATTGGCTTAGA    510
                     .||.||.||.||.||.||.||| |||.| ||.|||..|.|.|||||| ||
BL02470___kdg    471 CATACCAACCGGAGGAATCCATCCCGGC-GATGTGGAGAAGTGGCTT-GA    518

BSNT_03293___    511 -GCCGGAGC--TGGCGCCGTTGGAGTCGGCAGCCAGCTGGGC--AGCTGT    555
                      ||||||||  ||  ||.||.||.||.||.|||||||||..|  || || 
BL02470___kdg    519 TGCCGGAGCATTG--GCAGTAGGTGTGGGAAGCCAGCTGAACAAAG-TG-    564

BSNT_03293___    556 TCAAAAGAGGATTTGCAG-GCTGTTTTCCAAGTG----------------    588
                     |||.|||.||||.|.||| ||...||||  ||.|                
BL02470___kdg    565 TCAGAAGCGGATCTCCAGCGCATCTTTC--AGCGGCGGGCTCAGCAGAAA    612

BSNT_03293___    589 TAA    591
                     |||
BL02470___kdg    613 TAA    615


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.