Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05472 and BL02478
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05472___ywsC.1.5803.seq
# -bsequence dna-align/BL02478___pgsB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05472___ywsC-BL02478___pgsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05472___ywsC-BL02478___pgsB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05472___ywsC
# 2: BL02478___pgsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity: 939/1199 (78.3%)
# Similarity: 939/1199 (78.3%)
# Gaps: 34/1199 ( 2.8%)
# Score: 3688.5
#
#
#=======================================
BSNT_05472___ 1 ATGTGGTTACTCATTATAGCCTGTGCTG-TCATACTGGTCATCGGAATAT 49
||||||.||.|..|..||||||||| || ||.|..|.|..|||||.|| |
BL02478___pgs 1 ATGTGGGTAATGCTATTAGCCTGTG-TGATCGTTGTTGGGATCGGCAT-T 48
BSNT_05472___ 50 TA-GAAAAACGACGACATCAGAAAAACATTGATGCCCTCCCTGTTCGGGT 98
|| ||||||.|.||.||.|||.||||.||.|||||.||.|||||.||.||
BL02478___pgs 49 TATGAAAAAAGGCGCCACCAGCAAAATATCGATGCGCTGCCTGTCCGAGT 98
BSNT_05472___ 99 GAATATTAACGGCATCCGCGGAAAATCGACTGTGACAAGGCTGACAACCG 148
|||.||.|||||.||.||||||||.||.||.||||||||..|.|||||.|
BL02478___pgs 99 GAACATCAACGGTATACGCGGAAAGTCCACGGTGACAAGATTAACAACAG 148
BSNT_05472___ 149 GAATATTAATAGAAGCCGGTTACAAGACTGTTGGAAAAACAACAGGAACA 198
|.||||||||.|||||.||.|||||.||.||.|||||||||||.||.|||
BL02478___pgs 149 GGATATTAATCGAAGCAGGCTACAAAACAGTAGGAAAAACAACCGGGACA 198
BSNT_05472___ 199 GATGCAAGAATGATTTACTGGGACACACCGGAGGAAAAGCCGATTAAACG 248
||.|||||.||||||||.||||||||||||||.||.||||||||.|||.|
BL02478___pgs 199 GACGCAAGGATGATTTATTGGGACACACCGGAAGAGAAGCCGATCAAAAG 248
BSNT_05472___ 249 GAAACCTCAGGGGCCGAATATCGGAGAGCAAAAAGAAGTCATGAGAGAAA 298
.||.||.||.||||||||||||||||||||.||.||.||.||||.|||||
BL02478___pgs 249 AAAGCCGCAAGGGCCGAATATCGGAGAGCAGAAGGAGGTTATGAAAGAAA 298
BSNT_05472___ 299 CAGTAGAAAGAGGGGCTAACGCGATTGTCAGTGAATGCATGGCTGTTAAC 348
|.||.|||||||||||.||.||||||||||||||.||||||||.|||||.
BL02478___pgs 299 CGGTGGAAAGAGGGGCCAATGCGATTGTCAGTGAGTGCATGGCCGTTAAT 348
BSNT_05472___ 349 CCAGATTATCAAATCATCTTTCAGGAAGAACTTCTGCAGGCCAATATCGG 398
||.|||||.|||||||||||||||||||||.|.||.|||||.||||||||
BL02478___pgs 349 CCTGATTACCAAATCATCTTTCAGGAAGAATTGCTTCAGGCTAATATCGG 398
BSNT_05472___ 399 CGTCATTGTGAATGTTTTAGAAGACCATATGGATGTCATGGGGCCGACGC 448
|||.||.|||||.||..|.||.||.||.||||||||.|||||.|||||..
BL02478___pgs 399 CGTGATCGTGAACGTGCTGGAGGATCACATGGATGTGATGGGACCGACTT 448
BSNT_05472___ 449 TTGATGAAATTGCAGAAGCGTTTACCGCTACAATTCCTTATAATGGCCAT 498
|.||||||||.||||||||.||.||.||.||.||||||||||||||.|||
BL02478___pgs 449 TGGATGAAATCGCAGAAGCATTCACAGCAACCATTCCTTATAATGGACAT 498
BSNT_05472___ 499 CTTGTCATTACAGATAGTGAATATACCGAGTTCTTTAAACAAAAAGCAAA 548
.|.||.|||||.||||||||.||||||||.||||||||.||||..|||||
BL02478___pgs 499 TTGGTTATTACTGATAGTGAGTATACCGATTTCTTTAAGCAAATTGCAAA 548
BSNT_05472___ 549 AGAACGAAACACAAAAGTCATCATTGCTGATAACTCAAAAATTACAGATG 598
||||.|.|||||||||||||||.|.||.||.||.||.|||||.|||||||
BL02478___pgs 549 AGAAAGGAACACAAAAGTCATCGTCGCAGACAATTCTAAAATAACAGATG 598
BSNT_05472___ 599 AGTATTTACGTAAATTTGAATACATGGTATTCCCTGATAACGCTTCTCTG 648
|.||..|..|..|.|||||.||||||||||||||||||||.||.|||||.
BL02478___pgs 599 AATACCTCAGACAGTTTGAGTACATGGTATTCCCTGATAATGCGTCTCTT 648
BSNT_05472___ 649 GCGCTGGGTGTGGCTCAAGCACTCGGCATTGACGAAGAAACAGCATTTAA 698
|||||.|||||.||||||||..|.|||||||||||||||||.||.|||||
BL02478___pgs 649 GCGCTCGGTGTAGCTCAAGCGTTGGGCATTGACGAAGAAACCGCCTTTAA 698
BSNT_05472___ 699 GGGAATGCTGAATGCGCCGCCAGATCCGGGAGCAATGAGAATTCTTCCGC 748
.||.|||||||||||||||||.|||||||||||.|||||||||||.||||
BL02478___pgs 699 AGGCATGCTGAATGCGCCGCCTGATCCGGGAGCCATGAGAATTCTGCCGC 748
BSNT_05472___ 749 TGATCAGTCCGAGCG------AGCCTGGGCACTTTGTTAATGGGTTTGCC 792
|||| ||.|| |.||.||.||.||.||.||.||.|||||.
BL02478___pgs 749 TGAT------GAACGCCAAGAATCCCGGACATTTCGTCAACGGTTTTGCG 792
BSNT_05472___ 793 GCAAACGACGCTTCTTCTACTTTGAATATATGGAAACGTGTAAAAGAAAT 842
||.||.|||||..||||.|||||.||.||.|||||.||||||||||||||
BL02478___pgs 793 GCCAATGACGCAGCTTCCACTTTAAACATTTGGAAGCGTGTAAAAGAAAT 842
BSNT_05472___ 843 CGGTTACCCGACCGATGATCCGATCATCATCATGAACTGCCGCGCAGACC 892
.||.||.||.||.|||.|.||||||.||||.||||||||||||||.|||.
BL02478___pgs 843 AGGCTATCCTACGGATCAGCCGATCGTCATTATGAACTGCCGCGCCGACA 892
BSNT_05472___ 893 GTGTCGATCGGACACAGCAATTCGCAAATGACGTATTGCCTTATATTGAA 942
|.||.||..|.||||||||.||.||..|.||.||..|.||||||||||||
BL02478___pgs 893 GGGTAGACAGAACACAGCAGTTTGCGGAAGATGTCCTTCCTTATATTGAA 942
BSNT_05472___ 943 GCAAGTGAACTGATCTTAATCGGTGAAACAACAGAACCGATCGTAAAAGC 992
|||||||||||..|..|.||.||.|||||||||||.||||||||.|||||
BL02478___pgs 943 GCAAGTGAACTTGTGCTGATTGGAGAAACAACAGAGCCGATCGTCAAAGC 992
BSNT_05472___ 993 CTATGAAGAAGGCAAAATTCCTGCAGACAAACTGCATGATCTAGAGTATA 1042
.|||||||.|||||||||||||||.|||||.|||..||||.|.|||.|.|
BL02478___pgs 993 ATATGAAGCAGGCAAAATTCCTGCGGACAAGCTGTTTGATTTTGAGCACA 1042
BSNT_05472___ 1043 AGTCAACAGATGAAATTATGGAATTGTTAAAGAAAAGAATGCACAA---- 1088
|.|||||.||.|||||.||| ||..|...||||| ||||
BL02478___pgs 1043 AATCAACGGAAGAAATCATG---TTCATGCTGAAAA------ACAAGCTT 1083
BSNT_05472___ 1089 -----CCGTGTCATATATGGCGTCGGCAATATTCATGGTGCCGCAGAGCC 1133
|||.||.||.||.||.|||||.|||||.||.||.||.||.|||||
BL02478___pgs 1084 GAGGGCCGCGTTATTTACGGAGTCGGAAATATCCACGGAGCAGCGGAGCC 1133
BSNT_05472___ 1134 TTTAATTGAAAAAATCCACGAATACAAGGTTAAGCAGCTCGTAAGCTAG 1182
|.|.|||||||||||.||.||.||||||.|||||||||||||.||||||
BL02478___pgs 1134 TCTCATTGAAAAAATACAAGATTACAAGATTAAGCAGCTCGTTAGCTAG 1182
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