Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05531 and BL02482

See Amino acid alignment / Visit BSNT_05531 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:39
# Commandline: needle
#    -asequence dna-align/BSNT_05531___ywqE.1.5803.seq
#    -bsequence dna-align/BL02482___ywqE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05531___ywqE-BL02482___ywqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05531___ywqE-BL02482___ywqE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05531___ywqE
# 2: BL02482___ywqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity:     494/849 (58.2%)
# Similarity:   494/849 (58.2%)
# Gaps:         180/849 (21.2%)
# Score: 1233.5
# 
#
#=======================================

BSNT_05531___      1 ATGATCGATATTCACTGTCACATTCTTCCCGCAATGGATGACGGGGCAG-     49
                     ||||||||||||||.||.|||||||||.|.|...|.|||||.||.|||| 
BL02482___ywq      1 ATGATCGATATTCATTGCCACATTCTTGCGGGCGTTGATGATGGAGCAGC     50

BSNT_05531___     50 ----GTGATTCGGCCGACAGCATAGAAATGGC---AAGAGCCGCTGTTCG     92
                         .|||.|     |||||..||||||||||   |..||||||    |.
BL02482___ywq     51 ATGTATGAAT-----GACAGTTTAGAAATGGCTAAACAAGCCGC----CC     91

BSNT_05531___     93 T-CAGGGAATCCGGACGATCATTGCGACACCTCATCATAACAACGGTGTG    141
                     | |||||.||.|..|||||.||.||.|||||.||.||....||||  |||
BL02482___ywq     92 TCCAGGGGATTCATACGATTATCGCCACACCGCACCACCGAAACG--GTG    139

BSNT_05531___    142 TATA---------AAAACGAGCCAGC--TGCAG-----TCAGAGAAGCAG    175
                     ||||         ||||..|||||.|  |||||     ||.|        
BL02482___ywq    140 TATACGAACATCCAAAAGAAGCCATCCTTGCAGCTGTTTCGG--------    181

BSNT_05531___    176 CAGATCAGTTAAACAAACGTTTAAT-CAAA--GAAGACATTCC--TTTAC    220
                            |||.|| |.||| ..||| ||||  |||.||||.||  ||..|
BL02482___ywq    182 -------GTTTAA-AGACG-AGAATGCAAAAGGAAAACATCCCGGTTCTC    222

BSNT_05531___    221 ATGTGCTTCCGGGACAGGAAATCAGAATCTACGGCGAGGTGGAACAAGAC    270
                     || |.|..||||| |||||||||.|..|.||||||||..||.|.|..||.
BL02482___ywq    223 AT-TACCCCCGGG-CAGGAAATCCGCCTGTACGGCGAATTGAAGCGCGAT    270

BSNT_05531___    271 CTTGCCAAA---CAGCAG-CTGCT----TTCGCTGAATGATACAAAACAC    312
                     ||||    |   |.|||| |||||    .||||    .|..|||||..|.
BL02482___ywq    271 CTTG----AGCGCGGCAGACTGCTCAGCCTCGC----CGGCACAAAGTAT    312

BSNT_05531___    313 ATCTTGATTGAGTTTCCGTTTGATCACGTTCCCCGATATGCGGAGCAGCT    362
                     .|..|||||||..||||.|...|.||.||.||.||.|||||.||..||.|
BL02482___ywq    313 TTGCTGATTGAACTTCCTTACCACCATGTCCCGCGTTATGCCGAAAAGGT    362

BSNT_05531___    363 TTTTTATGATTTGCAGCTGAAAGGATATATTCCGGTTATCGCCCATCCTG    412
                     ..|.|..|||.|.||..|.||.||.||.||||||.|.|||||.||.||.|
BL02482___ywq    363 GCTGTTCGATCTCCAATTAAATGGTTACATTCCGATCATCGCACACCCCG    412

BSNT_05531___    413 AACGCAAC---------AGGGAAATTCGCGAAAACCCGTCCTTGCTGTAT    453
                     |.||.|||         |.|||.|.||.|||       ||  |||||||.
BL02482___ywq    413 AGCGGAACCTTGAATTGATGGAGAATCCCGA-------TC--TGCTGTAC    453

BSNT_05531___    454 CATCTTGTGGAAAAAGGAGCAGCATCT-----CAGATTAC---TTCAGGA    495
                     |..||.||..||||.||.||     ||     |||.|.||   |||   |
BL02482___ywq    454 CGCCTCGTCAAAAACGGCGC-----CTGCGCCCAGCTGACATGTTC---A    495

BSNT_05531___    496 AGTCTTGCGGGGACC--TTCGGCAAGCAGC-TGAAAGCATTTTCTCTCCG    542
                     ||||||||.||  ||  |||||| ||.||| |.|||            ||
BL02482___ywq    496 AGTCTTGCAGG--CCGTTTCGGC-AGAAGCGTCAAA------------CG    530

BSNT_05531___    543 GCTGG------------TTGAAGCCAATTTGATCCATTTCGTAGCCTCAG    580
                     |||.|            |||||||.||..|.|||||.||..|.||.||||
BL02482___ywq    531 GCTCGCCCGCCGCTTTCTTGAAGCGAACCTCATCCACTTTATCGCATCAG    580

BSNT_05531___    581 ATGCCCATAATGTGAAAACGAGAAATTTTCACACTCAAGAGGCCCTTTAT    630
                     |.|||||.||..|.|..||..||..|||               |.|||.|
BL02482___ywq    581 ACGCCCACAACCTCACGACCCGATCTTT---------------CTTTTTT    615

BSNT_05531___    631 GTT---CTAGAGAAAGAATTCGGCTCG-GAACTTCCTT--ATATGCTGAC    674
                     |.|   .||||.||.||.|.|||| || ||  ||.|||  |..||.|.||
BL02482___ywq    616 GATACAGTAGAAAACGATTACGGC-CGCGA--TTTCTTGAACGTGTTTAC    662

BSNT_05531___    675 GGAAAATGCAGAGCTTCTCCTGCGGAATC----AGACCATCTTCAGACAG    720
                     .|||||.||.|..||.|||||| |.||.|    |||     ||||.|.||
BL02482___ywq    663 AGAAAACGCGGGCCTGCTCCTG-GAAAACCGGGAGA-----TTCATAAAG    706

BSNT_05531___    721 --CCTCCGCAGCCGGTCAAAAGAAGAAAA--TTGTTTGGTCTTTTTTAA    765
                       .|.||||..||.||||||  |||||||  .||||.||.||..|.|.|
BL02482___ywq    707 AAACACCGCGTCCCGTCAAA--AAGAAAAAGCTGTTGGGCCTGCTGTGA    753


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