Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05557 and BL02497

See Amino acid alignment / Visit BSNT_05557 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:41
# Commandline: needle
#    -asequence dna-align/BSNT_05557___flhP.1.5803.seq
#    -bsequence dna-align/BL02497___flhP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05557___flhP-BL02497___flhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05557___flhP-BL02497___flhP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05557___flhP
# 2: BL02497___flhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity:     568/894 (63.5%)
# Similarity:   568/894 (63.5%)
# Gaps:         150/894 (16.8%)
# Score: 1643.0
# 
#
#=======================================

BSNT_05557___      1 ATGCTTAGGTCAATGCTAACGGCATCA---ACAACCTT--AAACCAGCTG     45
                     ||||||||.||.|||.|.|||||.|||   ||||..||  ||     |||
BL02497___flh      1 ATGCTTAGATCCATGATCACGGCTTCAAACACAATGTTTGAA-----CTG     45

BSNT_05557___     46 CAGCAGCAGATTGACACTATCAGCAGCAACCTTTCAAACAGCAACACAAC     95
                     ||..|.||.|||||.|.|||||||...||.|||.||||.|.|.|.|||||
BL02497___flh     46 CAAAAACAAATTGATAATATCAGCCATAATCTTGCAAATACCGATACAAC     95

BSNT_05557___     96 CGGCTATAAGGCAAAAGATACGAATTTTTCTGAGCTTGTCAGACAGCA-A    144
                     .||.||||||||.|||.|.||||..|||||.|||||..||||.||||| |
BL02497___flh     96 GGGATATAAGGCGAAAAACACGAGCTTTTCGGAGCTGATCAGGCAGCAGA    145

BSNT_05557___    145 TTCGATCAGGTTGATGAAAAAAACGAGGAAGTGGC-AAAAGCCCGAAAAA    193
                     || ||.|||||..|.||.|||||..|.|||||.|| ..||| |.||||.|
BL02497___flh    146 TT-GAACAGGTAAACGAGAAAAATAATGAAGTAGCTGCAAG-CAGAAAGA    193

BSNT_05557___    194 CGCCGCCCGG-CTTACGCCTTGGCGTCGGAGCGATGATGAATTCACGCCT    242
                     |||||||.|| ||| |||||.|||||||||||..|.||||    .||.|.
BL02497___flh    194 CGCCGCCAGGACTT-CGCCTCGGCGTCGGAGCCGTCATGA----CCGACC    238

BSNT_05557___    243 GGTCTCTG-------ATCAAGGAAGCATTCAGAAGACCGATCGCGATCTG    285
                     ||   |||       |.||.||||||.||.||.||||.|..||||||||.
BL02497___flh    239 GG---CTGACGCATAAGCAGGGAAGCCTTAAGGAGACGGGCCGCGATCTT    285

BSNT_05557___    286 GATATCGCATTTACGTCTCCATACCAGTATCTT-CAGGTAAATGT-----    329
                     |||||.|||.|.||.|||||.||.||||| ||| |||||.|||||     
BL02497___flh    286 GATATTGCACTGACTTCTCCTTATCAGTA-CTTCCAGGTCAATGTCGGCG    334

BSNT_05557___    330 ---AAATGGAAACCGCCAGTATACGAGGGACGGGGCGCTGTATGTAACGC    376
                        ||.||        ||.|||||.||.||||||||..|.||..|.||||
BL02497___flh    335 GGGAAGTG--------CAATATACAAGAGACGGGGCATTTTACCTTACGC    376

BSNT_05557___    377 CGTCCGCTGCGAATGCCAACCAGCTGCAGCTCGTCACTGGAA--ATGGGT    424
                     |..|.||.|.|||.|||||||||.|||||||.||.||  |||  |.||..
BL02497___flh    377 CTGCGGCGGGGAACGCCAACCAGATGCAGCTTGTGAC--GAAAGAAGGAC    424

BSNT_05557___    425 ATCCCGTACTTGATGAGAACGGCAATACAGTGAACATCGA-CAGCTCAAT    473
                     ||.||||.||||||||.|||||.|||.|..|...|.||.| ||||.|.||
BL02497___flh    425 ATGCCGTCCTTGATGAAAACGGAAATGCCATCCGCTTCAACCAGCGCTAT    474

BSNT_05557___    474 GAAGAATATCACCATCAA----TAAGAA-CGGCACCT-TAACCG---CAT    514
                     .||.|       ||||||    .|.||| |||.|..| |.||||   |.|
BL02497___flh    475 AAACA-------CATCAAAGTCGATGAATCGGGAAGTGTCACCGTTTCGT    517

BSNT_05557___    515 CTGAC------GGAAACGCGGTTCAGCGGTTTAATCTTGG---CGT----    551
                     |.|||      |||.|.|||...|.|||.|||||.||.||   |||    
BL02497___flh    518 CAGACAATCAGGGAGAAGCGCCACTGCGTTTTAACCTGGGGATCGTCCGG    567

BSNT_05557___    552 --TGTCCAAGTGAATAACCCTCAAG----AGCTGAAATCCGAAGGGAATA    595
                       ||||         ||.|||||.|    |.|.|||    |||||.|..|
BL02497___flh    568 GCTGTC---------AAACCTCAGGCTCTAACAGAA----GAAGGAAGCA    604

BSNT_05557___    596 ACCTTTTCTCTATTGATAATGCGGCAGCTTTTGA----AGAGCTAAACGG    641
                     |||||||.|||           |.|||| ..|||    |||||  |||||
BL02497___flh    605 ACCTTTTTTCT-----------GTCAGC-GATGAATTGAGAGC--AACGG    640

BSNT_05557___    642 CGCTAATAGACAA----AAC--ATC--GGCATGCAG--------------    669
                     |.||.||   |||    |||  |.|  ||| .||||              
BL02497___flh    641 CTCTTAT---CAACCTGAACGGAGCCGGGC-GGCAGGACATTTCTCTAAA    686

BSNT_05557___    670 -CAGGGCTCACTTGAGAT-GTCCAATGTCGATATTTCAGAA-CAAATGAC    716
                      |||||.|..||||| || .||.||||||||..|.|| ||| .|||||||
BL02497___flh    687 ACAGGGATTCCTTGA-ATCATCAAATGTCGACGTATC-GAAGGAAATGAC    734

BSNT_05557___    717 AGATTTGATCACGTCCCAGCGTTCATATCAGCTGAACAGCAGAACGATCA    766
                     .|||.|||||.|.||.|||.|.||||||||..||||...|.|..|.||||
BL02497___flh    735 CGATCTGATCTCTTCGCAGAGGTCATATCAAATGAATTCCCGCGCCATCA    784

BSNT_05557___    767 CAATGGGAGATCAAATGCTCGGTTTAATCAATTCAGTCAGATAA    810
                     |.|||||.|||||||||.|.||..|.|||||||||||..|.||.
BL02497___flh    785 CGATGGGCGATCAAATGATGGGGCTGATCAATTCAGTACGTTAG    828


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