Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00057 and BL02506

See Amino acid alignment / Visit BSNT_00057 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:42
# Commandline: needle
#    -asequence dna-align/BSNT_00057___xpaC.1.5803.seq
#    -bsequence dna-align/BL02506___xpaC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00057___xpaC-BL02506___xpaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00057___xpaC-BL02506___xpaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00057___xpaC
# 2: BL02506___xpaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 698
# Identity:     416/698 (59.6%)
# Similarity:   416/698 (59.6%)
# Gaps:         163/698 (23.4%)
# Score: 1145.5
# 
#
#=======================================

BSNT_00057___      1 ATG---CAGAGATTTTTTCACTTTTTGAT--GTGGAGTTTAACT------     39
                     |||   |.||   ||.||||.|||.||||  |||     .||||      
BL02506___xpa      1 ATGAAACCGA---TTCTTCATTTTATGATTCGTG-----CAACTGCTGCA     42

BSNT_00057___     40 AG--------CAGTGCGACTTTTGTTTTCATTGGAATATTGAGCTTTTTT     81
                     ||        |.||||..||||.||||.||           |||||.||.
BL02506___xpa     43 AGTGCATTGTCCGTGCTCCTTTGGTTTACA-----------AGCTTCTTC     81

BSNT_00057___     82 G-GTTTAAACCAGTCGCTTTTTTTATCTATTGTTTATGGGCTT--GCTTC    128
                     | |||| ||||||.|       ||.|||..|| |..|..||||  ||..|
BL02506___xpa     82 GCGTTT-AACCAGAC-------TTTTCTGCTG-TCCTCCGCTTACGCAGC    122

BSNT_00057___    129 TGGAGC------AGCCGTATATATAGCTGGCATCTGG--AATGCAAG-AC    169
                     .|||||      .|||||.|||.|   ||||    ||  ||||   | ||
BL02506___xpa    123 CGGAGCCTGGATTGCCGTTTATCT---TGGC----GGGAAATG---GTAC    162

BSNT_00057___    170 GG-------TTATTTCTTAAAA-------AGCATGAATTGACAGGAAGAG    205
                     ||       |||||| ||||||       |||      |.|||.|..|.|
BL02506___xpa    163 GGAACCTATTTATTT-TTAAAAGAAAACCAGC------TTACAAGGCGGG    205

BSNT_00057___    206 AGTATGCTTACATTAAGAAAAACTTAGA-------GGAAGCAAGGCAGAA    248
                     |.|||||.||.||     |||||  |||       ||||||.|.||.|||
BL02506___xpa    206 AATATGCCTATAT-----AAAAC--AGAATCTGCGGGAAGCTAAGCTGAA    248

BSNT_00057___    249 AATGGTCCGTCTTAGGAAAA-CCTTGTTT-CAGGCTAAAAGCATTCAAAT    296
                     |||.|.||| .|||.||||| ||||.||| || |.|||||.||||||||.
BL02506___xpa    249 AATTGCCCG-GTTAAGAAAAGCCTTATTTGCA-GTTAAAAACATTCAAAC    296

BSNT_00057___    297 GTTTAAGCAAAATGCAGAAATGCTAAGGATTGTGAGAAGGATTTATCTCC    346
                     ..||||.||.|||..||||||.||..||||.||.||||..|||||...|.
BL02506___xpa    297 TATTAAACAGAATCTAGAAATTCTTCGGATCGTCAGAAAAATTTACAGCA    346

BSNT_00057___    347 TCACCAAAAAAGAGCCAAAGCGGTTTTATCAGGCAGAACGATTTTTTTAT    396
                     ||||.||.||.||.||||||||.||||||||||..|||||.||||.||||
BL02506___xpa    347 TCACAAAGAACGAACCAAAGCGTTTTTATCAGGTTGAACGCTTTTATTAT    396

BSNT_00057___    397 CAAACTCTCGATTCGGTTGTTGAATTGACAGAGAAGTATGCTTTTCTATC    446
                     ||||..||.|||||..||||||||.||||.||.|||.||||.|||.|..|
BL02506___xpa    397 CAAAGCCTTGATTCAATTGTTGAACTGACGGAAAAGCATGCGTTTTTGGC    446

BSNT_00057___    447 ATCTCACCCAAA--AAAAAGCAAAGAACTGTCGA--TGTCGTTAAGTGAG    492
                     .||.||.|||||  ..||.||.||    |.|.||  |.||.|||||.||.
BL02506___xpa    447 GTCACAGCCAAAGCGCAATGCGAA----TCTTGAAGTTTCTTTAAGCGAA    492

BSNT_00057___    493 ACACGCATCACTCTTACTGAATTGA--------CCAAGCGTTTAGAGGAA    534
                     ||.||.||.|       || ||.||        ||||||..||.||.||.
BL02506___xpa    493 ACGCGTATGA-------TG-ATCGATAAGCTCGCCAAGCAATTGGAAGAC    534

BSNT_00057___    535 GA--TTTA--ACTCAGGCAATGGATGATGAA-------TTTGACGAGTTG    573
                     ||  ||||  |||           ||.||||       .|||||.|.|||
BL02506___xpa    535 GACCTTTATGACT-----------TGCTGAAAACAGACATTGACCACTTG    573

BSNT_00057___    574 CAGTTTGAATTAGACGCAGCAAAACATTCATTAAAGAAATAA------    615
                     .||||||||.|.||||..||.||.|||||   ||.||||.||      
BL02506___xpa    574 GAGTTTGAACTGGACGTCGCGAAGCATTC---AATGAAAAAAAGCTGA    618


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