Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00059 and BL02508

See Amino acid alignment / Visit BSNT_00059 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:42
# Commandline: needle
#    -asequence dna-align/BSNT_00059___yaaO.1.5803.seq
#    -bsequence dna-align/BL02508___yaaO.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00059___yaaO-BL02508___yaaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00059___yaaO-BL02508___yaaO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00059___yaaO
# 2: BL02508___yaaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1563
# Identity:     990/1563 (63.3%)
# Similarity:   990/1563 (63.3%)
# Gaps:         240/1563 (15.4%)
# Score: 2899.5
# 
#
#=======================================

BSNT_00059___      1 ATGAACACACCTTTATATAAAGCATTAATTCAACATGC-GAGAAGAAATT     49
                     |||||.|||||||||||||.||||||..|..|.||||| || |.||.||.
BL02508___yaa      1 ATGAAGACACCTTTATATACAGCATTGGTGAACCATGCTGA-AGGACATC     49

BSNT_00059___     50 CTCATTCATTTCATGTTCCGGGACATCACAATGGAGATGTCTTTTTTGAT     99
                     .|.||||.|||||.||||||||||||||||||||||||||||||||||||
BL02508___yaa     50 ATTATTCTTTTCACGTTCCGGGACATCACAATGGAGATGTCTTTTTTGAT     99

BSNT_00059___    100 GACGCTAAGTCAATATTCGATCCGCTTCTCACCATTGATGTAACTGAACT    149
                     ||.||.||..|..|.||.||..||.||||||...|.|||.||||||||||
BL02508___yaa    100 GAAGCAAAAACTTTTTTTGAAACGATTCTCAAAGTGGATCTAACTGAACT    149

BSNT_00059___    150 GGCAGGATTGGATGATCTCCATCATCCTTCCGGGGTGATTAAGGAAGCTC    199
                     |.|||||.||||||||.|.|||.|.||.||.||.||.||.||||||||.|
BL02508___yaa    150 GACAGGACTGGATGATTTACATGAGCCATCTGGCGTCATCAAGGAAGCAC    199

BSNT_00059___    200 AGGA------------GCTTGTCAGTCAATTATATGGATCGGCGGAAAGT    237
                     ||||            ||||            ||.|||.|||..|||||.
BL02508___yaa    200 AGGATTTAGTTTCGCGGCTT------------TACGGAGCGGAAGAAAGC    237

BSNT_00059___    238 TTTTTTCTGGTAAATGGTACGACTGTCGGAAACTTAGCGATGATTTTATC    287
                     ||||||||.||.||||||.||||.||.||.||..|.||.|||||..|..|
BL02508___yaa    238 TTTTTTCTCGTCAATGGTTCGACCGTTGGGAATCTGGCTATGATCCTGGC    287

BSNT_00059___    288 TGTTTGTGAACCTGGTGATACAATTCTGGTTCAAAGAAACTGTCATAAAT    337
                     |||||||.|.||.||||||||.||.||.|||||..|.|||||.|||||.|
BL02508___yaa    288 TGTTTGTCAGCCGGGTGATACGATACTCGTTCAGCGTAACTGCCATAAGT    337

BSNT_00059___    338 CTGTATTTCATGCTGTTGA--TTTGGCCGGTGCTAAGCCGGTTTATCTTG    385
                     |||||||||||||..||||  |||  |.||.||..|.||||||| |.|||
BL02508___yaa    338 CTGTATTTCATGCGATTGAACTTT--CAGGCGCCCATCCGGTTT-TTTTG    384

BSNT_00059___    386 -CACCTGACGTTGATTCAGCGATGCATGTGCCTACGCATGTTCCGCTTGG    434
                      ||||.||..|||||...||||||..|||.||.||.|||.|.|.|...|.
BL02508___yaa    385 ACACCGGAAATTGATGAGGCGATGGCTGTTCCCACACATATACTGTACGA    434

BSNT_00059___    435 AACAATTAAAGAGGCCCTGGAAGCATATCCAGATGCGAAAGGCTTGGTAC    484
                     ||||.||.||||.||..|...|..||||||..|.||.|||||..|.||..
BL02508___yaa    435 AACAGTTGAAGATGCAATTTCACAATATCCGCACGCAAAAGGGATCGTGT    484

BSNT_00059___    485 TGACCAATCCGACATATTACGGACAT--AGTGCTGATTTGACTGA----G    528
                     ||||..||||.|..||.|||||.|||  |||  ||||    ||||    |
BL02508___yaa    485 TGACATATCCAAATTACTACGGCCATGCAGT--TGAT----CTGAAGCCG    528

BSNT_00059___    529 ATCATTACTGAA---GCCCATCATTACGGGATTCCTGTTTTGGTCGATGA    575
                     |||||   .|||   |||||.||..|||..|||.|.|||||.|||||.||
BL02508___yaa    529 ATCAT---AGAAAAGGCCCACCAACACGATATTTCCGTTTTAGTCGACGA    575

BSNT_00059___    576 AGCGCATGGCGCACATTTTATTTTAGGTGAGCCTTTTCCGGTCTCAG---    622
                     .||.||.|||||.||||||.|..|.||..|.||.||||    |.|||   
BL02508___yaa    576 GGCTCACGGCGCCCATTTTGTGCTGGGCCATCCATTTC----CCCAGTCG    621

BSNT_00059___    623 -CTTTAAAAATGGGGGCAGATATTGTTGTTCAGTCGGCCCACAAAACGTT    671
                      |.||.|||..|||.||.|||...||.||.|||||.||.||.||||||.|
BL02508___yaa    622 TCGTTGAAAGCGGGCGCTGATGCCGTCGTCCAGTCCGCGCATAAAACGCT    671

BSNT_00059___    672 GCCTGCCATGACGATGGGTTCTTATTTGCATCTTAACAGCAGCTGCAGGA    721
                     .||.||.|||||||||||.||.|||.||||||||||   ||||.||||||
BL02508___yaa    672 CCCGGCGATGACGATGGGGTCCTATCTGCATCTTAA---CAGCGGCAGGA    718

BSNT_00059___    722 TTAACAGGGATCGGGTGGCAGAGTATTTAAACCGAT--TACAAAGCAGCA    769
                     |.||||||||..|..|||||.|.|||.| ..||| |  |.||||||||||
BL02508___yaa    719 TCAACAGGGACAGACTGGCATACTATCT-GTCCG-TGCTTCAAAGCAGCA    766

BSNT_00059___    770 GCCCGTCTTATCCGATAATGGCTTCGTTAGATATTGCCCGCGCTTATGTA    819
                     |.||.||.||.||.||.|||||.||.||.|||||.||..|.||.||.|  
BL02508___yaa    767 GTCCTTCCTACCCAATTATGGCATCTTTGGATATAGCTAGGGCATACG--    814

BSNT_00059___    820 CAGCATAT-TATAGAAGAACAAAAGCTTTCTGACATTCTGCAGCGGAT--    866
                     |.|.|.|| |.|.||| ||||||     ||..|       ||||.|||  
BL02508___yaa    815 CCGAAGATATCTTGAA-AACAAA-----TCGAA-------CAGCCGATAT    851

BSNT_00059___    867 --ACAAACACTTAAACAAACGTTTGA--------TTCACTTACAAATGCA    906
                       |.|||.|..|.|.|||   |.|||        ||..||  |||||..|
BL02508___yaa    852 TGAGAAAGAGCTCATCAA---TATGAGAGAAGTCTTTTCT--CAAATAAA    896

BSNT_00059___    907 -GAAGCTGTTA------ACCCTGCTAATCCACTGATCATCACG----GAC    945
                      |.|||||.||      |.||.|||.||.|.|..|||    ||    ||.
BL02508___yaa    897 CGGAGCTGATATTGTCGAGCCGGCTGATGCCCGTATC----CGGCAAGAT    942

BSNT_00059___    946 CCGCTGAAGCTCACAATTCGTTCAAAACG--CGGGCATTCTGGCTATACG    993
                     |||||.|||||....||..|.||  |.||  |||.||.||.||.|.|...
BL02508___yaa    943 CCGCTTAAGCTGTGTATCAGATC--AGCGTACGGCCACTCCGGTTTTGAA    990

BSNT_00059___    994 CTGCAAAGCATATTAGAGCGTGCCAAC-ATATTCA--CTGAGCTTGCTGA   1040
                     |||.||..||||||.||   .||.||| ..||.||  ||||..|.||.||
BL02508___yaa    991 CTGAAATCCATATTTGA---AGCAAACGGCATCCATCCTGAATTGGCAGA   1037

BSNT_00059___   1041 TGAAAATCAAGTTCTGCTCGTTCTCCCATTGGGGGGAAAACGGAGAATAA   1090
                     |||||..|||||.|||.|..|.||.||..|.|..||||||     |||  
BL02508___yaa   1038 TGAAAGGCAAGTCCTGTTGATCCTGCCGCTTGAAGGAAAA-----AAT--   1080

BSNT_00059___   1091 ATG-------CTGAA---ACCATTAGAAGCATTGATGA----AAAGATTG   1126
                     |||       |.|||   |.||..|.||.||.|.|.||    ||||||..
BL02508___yaa   1081 ATGCCCGCGCCGGAACTGATCAGCACAATCAGTAAAGACATGAAAGATAC   1130

BSNT_00059___   1127 AG------AAAACG-----CCT-CCGG-ATCAGG-----CGTTTGTTTCT   1158
                     ||      .|||.|     ||| |||| ||| ||     |      ||||
BL02508___yaa   1131 AGCAGTTCGAAATGATCTTCCTGCCGGAATC-GGAATCCC------TTCT   1173

BSNT_00059___   1159 GCAGAATGGGGAGTGCAGCCTGTTACTGTCTTGCCTTATCCAAAAAAG--   1206
                     |.|.||               ||.||.|..|||||||| ||..|||||  
BL02508___yaa   1174 GAAAAA---------------GTCACGGCTTTGCCTTA-CCGGAAAAGCA   1207

BSNT_00059___   1207 ----GTCTTACATTCGTTTAAGAAAGAATATGTGGACTTTGA-GGAAGCA   1251
                         |||     |.|.||.||.|||||||..|| |.||||.| .||||||
BL02508___yaa   1208 AGTTGTC-----TGCCTTCAAAAAAGAATCGGT-GCCTTTTACCGAAGCA   1251

BSNT_00059___   1252 ACTGGCCGGCTGAAT----GCAGAAGATATCATCCCTTATCCTCCGGGTA   1297
                         ||.|||.||||    ||.|||....|||..||||||||||||||.|
BL02508___yaa   1252 ----GCGGGCAGAATAAGCGCCGAATCGGTCACACCTTATCCTCCGGGCA   1297

BSNT_00059___   1298 TCCCGATGATTATGGCGGGAGAAAGAATAACAAAAGAAAGTGTGCAAAAG   1347
                     |.|||.||||.||||||||.||.|||||||||||||         |.|.|
BL02508___yaa   1298 TTCCGTTGATCATGGCGGGTGAGAGAATAACAAAAG---------AGACG   1338

BSNT_00059___   1348 CTCAGCCG-------------CTTGATCAGCATGAAAACGCATGTTCAAG   1384
                     .|||||||             .|.||||.|.|||.|    ||..||||.|
BL02508___yaa   1339 ATCAGCCGGCTGACGCGGCTCGTCGATCTGAATGTA----CACATTCAGG   1384

BSNT_00059___   1385 GGAATATGAAA----ATCAAAGAGAAACAACTACTTGTTTATATAGAAGA   1430
                     |.|    |.||    .|||||.|.||.|||.||..|||.|||||||||||
BL02508___yaa   1385 GCA----GCAATCAGCTCAAACAAAAGCAATTAACTGTATATATAGAAGA   1430

BSNT_00059___   1431 GGAGAAATCATGA   1443
                     |||||||||||||
BL02508___yaa   1431 GGAGAAATCATGA   1443


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