Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04583 and BL02522

See Amino acid alignment / Visit BSNT_04583 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:44
# Commandline: needle
#    -asequence dna-align/BSNT_04583___yulF.1.5803.seq
#    -bsequence dna-align/BL02522___yulF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04583___yulF-BL02522___yulF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04583___yulF-BL02522___yulF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04583___yulF
# 2: BL02522___yulF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1048
# Identity:     689/1048 (65.7%)
# Similarity:   689/1048 (65.7%)
# Gaps:         122/1048 (11.6%)
# Score: 2068.0
# 
#
#=======================================

BSNT_04583___      1 GTGATACGTTTTGCAATAATAGGAACCAACTGGATTACAGACCGCTTTCT     50
                     .||||.||.||.|...||.|.|||||.||.||||||||.|||||.|||||
BL02522___yul      1 ATGATGCGGTTCGGGGTAGTCGGAACAAATTGGATTACCGACCGGTTTCT     50

BSNT_04583___     51 TGAGTCAGCAGCGGAT--ATCGAAGATTTTCAGCTGACTGCTGTTTATTC     98
                     ||.|.|.||  |.|.|  ||||||||||||||..|.||.||.||.|||||
BL02522___yul     51 TGGGGCGGC--CCGTTTGATCGAAGATTTTCAATTAACCGCGGTATATTC     98

BSNT_04583___     99 AA-GATCGGCTGAACGCGCTGGCGAGTTTGCTGC-TAAACACAACGCTGC    146
                     || ||.||| .||.||||...|.||.||.|| || .|||   .|||..||
BL02522___yul     99 AAGGACCGG-AGAGCGCGGACGTGAATTCGC-GCAGAAA---TACGGAGC    143

BSNT_04583___    147 GCATGC--CTTCTCAGACC---TTCAG-GAAATGGCGGCGAGCGATTGCT    190
                     ..|.||  .||.|   |||   .||.| ||||||||.|.|||||| ||.|
BL02522___yul    144 CGAGGCGGTTTTT---ACCGATATCGGAGAAATGGCTGAGAGCGA-TGTT    189

BSNT_04583___    191 -TTGATGCCGTATACATAGCGAGCCCGAACGCTCTTCACAAGGAACAAGC    239
                      |||||||.|||||.||.||.||.||.|||.||.|.||.||.||.||.||
BL02522___yul    190 ATTGATGCGGTATATATCGCAAGTCCCAACTCTTTACATAAAGATCAGGC    239

BSNT_04583___    240 CGTTCTCTTTATGAACCATGGCAAGCATGTGCTTTGTGAGAAGCCGTTTG    289
                     .|||...||.|||||....||.||.||.||.||.||.||.||.|||.|||
BL02522___yul    240 AGTTACATTCATGAAAAGCGGAAAACACGTCCTGTGCGAAAAACCGCTTG    289

BSNT_04583___    290 CTTCGAATACAAAAGAAACAGAAGAGATGATCTCAGCGGCTAAGGCAAAC    339
                     |.||..||...||||||.|.|||||.|||.|...|.|.||..|||.|.||
BL02522___yul    290 CGTCCCATGTCAAAGAAGCGGAAGAAATGGTAAAAACAGCGCAGGAACAC    339

BSNT_04583___    340 GGCGT----TGTTCTCATGGAAGCAATGAAGACCACTTTCCTGCCGAATT    385
                     .||||    |    |.||||||||.|||||.||.||.||.||.|||||||
BL02522___yul    340 CGCGTAACAT----TTATGGAAGCGATGAAAACGACGTTTCTTCCGAATT    385

BSNT_04583___    386 TCAAAGAGCTGAAAAAAC-------ACCTGCATAAAATCGGCACTGTCCG    428
                     |.||       |||.|.|       |||||||.||||||||||..|||||
BL02522___yul    386 TTAA-------AAACATCAGTCGCAACCTGCACAAAATCGGCAAAGTCCG    428

BSNT_04583___    429 CAGATTTACCGCAAGCTACTGCCAGTATTCCTCACGATATGACGCGT-TC    477
                     |.|.|||||.||.|||||||||||.||.||.||.||.||||||||.| ||
BL02522___yul    429 CCGTTTTACAGCCAGCTACTGCCAATACTCTTCCCGCTATGACGCCTATC    478

BSNT_04583___    478 AGAAGCGGAACTGTTTTGAATGCGTTTCAGCCTGAGCTT--TCCAATGGG    525
                      |||.||||||.||.||.||.||.|||.|.||  .||||  ||.||.||.
BL02522___yul    479 -GAAACGGAACCGTCTTAAACGCATTTAATCC--GGCTTTATCGAACGGT    525

BSNT_04583___    526 TCATTAATGGATATTGGCGTCTATTGTATTTATCCGGCTGTTGTGTTGTT    575
                     ||.||.||||||||.|||||||||||..||.||||.||..|.||..||||
BL02522___yul    526 TCCTTGATGGATATCGGCGTCTATTGCGTTCATCCCGCGATCGTCCTGTT    575

BSNT_04583___    576 TGG----CGCGCCGAAGGATGTAAAAGCAAACGGATATGCTTTATCC---    618
                     .||    |.|..||||    ||.|||||.|||||    || |.||||   
BL02522___yul    576 CGGCAAACCCCTCGAA----GTCAAAGCGAACGG----GC-TGATCCTTG    616

BSNT_04583___    619 --TCCGGAGTGGACGGAGAAGGAACTGTCATTCTGTCT----TACGACGG    662
                       ||.||.|.||||||.||||||||.|   |.|||| |    |||.|.|.
BL02522___yul    617 AGTCAGGGGCGGACGGTGAAGGAACAG---TGCTGT-TAAAATACAAGGA    662

BSNT_04583___    663 GTTCGAAGCTGTTCTGATGCATTCCAAAATCTCTACTTCCT--ATGCCCC    710
                     |..||||||.||.||||||||.||.||||||||.|.|||||  ||  |||
BL02522___yul    663 GCACGAAGCCGTACTGATGCACTCGAAAATCTCAAATTCCTTCAT--CCC    710

BSNT_04583___    711 GGCTGAAATCCAGGGTGAAGACGGGACGATTGTAATCGATACGATTCACC    760
                     |||||||||.||.||.|||||.||..|.||.||.|||||||..||.||||
BL02522___yul    711 GGCTGAAATTCAAGGAGAAGAAGGCTCTATCGTCATCGATAAAATCCACC    760

BSNT_04583___    761 GGCCTGAACGTGTTGAAATCCGCTACCGGGACGGCCGCCTTGAAAACATC    810
                     |.||.||||..||.||.||||||||.||||||||.||..|||  ||||||
BL02522___yul    761 GCCCCGAACAAGTCGACATCCGCTATCGGGACGGTCGGGTTG--AACATC    808

BSNT_04583___    811 --GCGATCCCTGATCCTAAACCAGCGATGTTCTATGAAGCAGAAGAATTT    858
                       .||.|.||||||...|||||.||.|||||.||||||.||||.|||||.
BL02522___yul    809 TTACGCTGCCTGATGACAAACCGGCCATGTTTTATGAAACAGAGGAATTC    858

BSNT_04583___    859 GTCACGCTCATAAAAGA------GAATAAGCTGGAATCTGAAGAAAATAC    902
                     .|||...|.||.|||.|      ||      |.||.|||......||.||
BL02522___yul    859 ATCAATTTAATTAAACAAGGGCGGA------TCGAGTCTTCGCTTAACAC    902

BSNT_04583___    903 ATTTGAACGGTCT-TTGACCACCGCAAAGATT-------ATGGAAGAAGC    944
                     .||||||||.||| |.|||        |.|||       ||.||.|||||
BL02522___yul    903 GTTTGAACGTTCTATAGAC--------ACATTGGCGGTCATAGATGAAGC    944

BSNT_04583___    945 AAGAAAGCAAATGGGGATTGTATACCCTGCTGATCA-----AGCTTAA    987
                     ..|.||.||.||.||..|.||.|.|||.||||||||     ||     
BL02522___yul    945 GCGCAAACAGATCGGTCTCGTTTTCCCCGCTGATCACATGTAG-----    987


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