Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04600 and BL02523

See Amino acid alignment / Visit BSNT_04600 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:45
# Commandline: needle
#    -asequence dna-align/BSNT_04600___tgl.1.5803.seq
#    -bsequence dna-align/BL02523___tgl.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04600___tgl-BL02523___tgl.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04600___tgl-BL02523___tgl.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04600___tgl
# 2: BL02523___tgl
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 810
# Identity:     506/810 (62.5%)
# Similarity:   506/810 (62.5%)
# Gaps:         144/810 (17.8%)
# Score: 1522.5
# 
#
#=======================================

BSNT_04600___      1 ATGATTATTGTATCAGGACAATTGCTCCGTCCCCAGGATATTGAAA----     46
                     |||||.|.|||.||.||..|...|||||||||..|||||||.||||    
BL02523___tgl      1 ATGATAAGTGTTTCGGGCTACCGGCTCCGTCCTGAGGATATCGAAAAACT     50

BSNT_04600___     47 -ATTGGCAGATTGATCA-----------AAATCTGAATCCGCTGTTAAAA     84
                      |.||.|||     |||           |.|||..||.|||         
BL02523___tgl     51 GAATGTCAG-----TCAGACGCAGAGAGACATCGCAAACCG---------     86

BSNT_04600___     85 GAGATGATTGAGACGCCTGTTCAGTTTGAT---TATCATTCAATTGCTGA    131
                       ||||.|.|..|.||| ||.|.|.|  ||   ||...||||||..|.||
BL02523___tgl     87 --GATGCTGGCCATGCC-GTCCGGAT--ATAGATACGGTTCAATCTCAGA    131

BSNT_04600___    132 ACTGATGTTTGAGCTTAAACTGCGGATGA--ATATTGTAGCAGCGG-CAA    178
                     ||||.|.||||||||.|.| |.|.|| ||  |||..||...|.||| ||.
BL02523___tgl    132 ACTGTTATTTGAGCTGAGA-TTCAGA-GAGCATACCGTCAAATCGGCCAG    179

BSNT_04600___    179 AGACGCTGCACAAAAGCGGGGCGAAGTTTGCCACTTTTTTAAAAACATAC    228
                     ||| ||||..|||.|||||.||||||||||||||.||||.|||.||||||
BL02523___tgl    180 AGA-GCTGATCAACAGCGGAGCGAAGTTTGCCACCTTTTCAAAGACATAC    228

BSNT_04600___    229 GGGAATACAACGTATTGGAGGGTTTCACCGGAGGGCGCCTTGGAGCTGAA    278
                     ||||||..|..||.|||||||||..|.||.|||||.||.||||||.||||
BL02523___tgl    229 GGGAATGAAGAGTTTTGGAGGGTGACGCCTGAGGGGGCTTTGGAGTTGAA    278

BSNT_04600___    279 ATACAGAATGCCGCCTTCAAAAGCGATTCGGGACATTGCAGAGAACGGCC    328
                     .|||||....|||.|||||||.||||||||..|.|||...||.|.|||||
BL02523___tgl    279 GTACAGGGCACCGGCTTCAAAGGCGATTCGAAATATTTTTGAAAGCGGCC    328

BSNT_04600___    329 CGTTTTATGCGTTTGAATGCGCAACCGCAATCGTTATCATTTATTACTTG    378
                     |.|.||||||.|||||.|||||.||.||.||.||.|||||||.|||..||
BL02523___tgl    329 CTTCTTATGCTTTTGAGTGCGCGACTGCGATTGTCATCATTTTTTATATG    378

BSNT_04600___    379 GC-CTTAATCGATACAATCGGTGAAGATAAATTCAATGCCAG--CTTTGA    425
                     || ||| .||.|.||.|||||.||              ||||  .|||||
BL02523___tgl    379 GCGCTT-CTCAAAACGATCGGCGA--------------CCAGACATTTGA    413

BSNT_04600___    426 C------------AGAATTATTTTATATGACTGGCATTATGAGAAATTGC    463
                     |            ||.||.||||||||.||.|||||.||||||....|||
BL02523___tgl    414 CCGGAATTATCAAAGGATCATTTTATACGATTGGCACTATGAGCGGCTGC    463

BSNT_04600___    464 CGATCTATACGGAAACAGGACACCACTTTTTCCTT---GGAGATTGTTTG    510
                     |||||||||||||.|.||||.||.||   |.||||   |||||.||..||
BL02523___tgl    464 CGATCTATACGGATAAAGGAAACGAC---TACCTTCCGGGAGACTGCCTG    510

BSNT_04600___    511 TATTTTAAGAATCCTGAATTTGATCCGCAAAAG-GCGCAATGGAGAGGCG    559
                     |||||.|||||.||||||||.||||| |..||| .||||.|||.|.||.|
BL02523___tgl    511 TATTTCAAGAACCCTGAATTCGATCC-CTCAAGACCGCAGTGGCGCGGAG    559

BSNT_04600___    560 AAAATGTGATTTTACTGGGGGAAGATAA---ATATTTTGCCCATGGTCTT    606
                     ||||||..||||||||   .|||.||||   .|||...||.||.||.||.
BL02523___tgl    560 AAAATGCTATTTTACT---TGAAAATAATCTCTATGCGGCACACGGCCTG    606

BSNT_04600___    607 GGAATCTTAAACG--GAAAGCAAATTATAGATAAGCTGAA--TTCTTTTA    652
                     ||.|||||||.||  ||||  .|||.||.||.||.|||||  ..||    
BL02523___tgl    607 GGGATCTTAAGCGGCGAAA--CAATCATTGAAAAACTGAACGGGCT----    650

BSNT_04600___    653 GGAAAAAAGGAGCCT----TACA---GTCAGCCTACCTTCTGTCTCAGGC    695
                      ||.||    |||||    .|||   |||.|||||.||.||.||.||.|.
BL02523___tgl    651 -GAGAA----AGCCTCATGCACAGACGTCCGCCTATCTGCTTTCCCAAGT    695

BSNT_04600___    696 GACCAGACTGGATGTTCCGTCTCTTTTCCGCATCGTCCGCTAA-------    738
                     |||..|..|.|||.|||||          ||||       |||       
BL02523___tgl    696 GACGCGGGTTGATATTCCG----------GCAT-------TAATTCAAAT    728

BSNT_04600___    738 ----------    738
                               
BL02523___tgl    729 GATCAGATAG    738


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.