Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04635 and BL02533

See Amino acid alignment / Visit BSNT_04635 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:46
# Commandline: needle
#    -asequence dna-align/BSNT_04635___kapB.1.5803.seq
#    -bsequence dna-align/BL02533___kapB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04635___kapB-BL02533___kapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04635___kapB-BL02533___kapB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04635___kapB
# 2: BL02533___kapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 427
# Identity:     269/427 (63.0%)
# Similarity:   269/427 (63.0%)
# Gaps:          77/427 (18.0%)
# Score: 811.5
# 
#
#=======================================

BSNT_04635___      1 ATGA----------GCACGTTTGAGACAGGCTCTATCGTTAAAGGATTTT     40
                     .|||          .||.||..||||       |..|||.||.||.||||
BL02533___kap      1 GTGAACAACCAATTTCAAGTCGGAGA-------TCGCGTAAAGGGCTTTT     43

BSNT_04635___     41 ACAAAACAGGTGTATACATAGGAGAAATCACGGCTTGCAGGCTGCAGCAT     90
                     |.||||||||.||.|||||.||.|||||.||||.|...|..|.|..|||.
BL02533___kap     44 ATAAAACAGGCGTCTACATCGGCGAAATTACGGATGTTAAACCGATGCAC     93

BSNT_04635___     91 TATTTAGTGAAAGTGAAAGCGGTTCTTACCCATCCCGCTCAGGGAGACCT    140
                     ||..|.||.|||.|....||.||.||.||||||||....|||||.|||||
BL02533___kap     94 TACCTGGTCAAAATCCTCGCCGTGCTGACCCATCCGAAGCAGGGCGACCT    143

BSNT_04635___    141 TCATCATCCAAAACAGGCGGATGTGCCATTTTTCCATGAGAGAAAAGCGC    190
                     |||||||||.||.|.|||.||.||.||.|||||.|||||..|||||||||
BL02533___kap    144 TCATCATCCCAATCGGGCAGACGTCCCTTTTTTTCATGAACGAAAAGCGC    193

BSNT_04635___    191 TCGCATATGGTGAACAGACCAATATCCCCCACCATATGGTGAAGCC-TTA    239
                     ||||.||.|||||||||||.||||||||.||||..||||||||||| || 
BL02533___kap    194 TCGCTTACGGTGAACAGACGAATATCCCGCACCGCATGGTGAAGCCGTT-    242

BSNT_04635___    240 TGACGGTGAA---GTGCCGGATTATACCGAATCTCTGCGGGAGGCGACAG    286
                        ||.||||   ||.|||||||||.|.||.||.||           |.|
BL02533___kap    243 ---CGATGAAGCTGTACCGGATTATGCGGATTCGCT-----------CCG    278

BSNT_04635___    287 CACAGCTGAGAGCC----AAATTGAATGAGGAT---------GGTTCG--    321
                     |.|||||..|||||    |||   ||  .||||         |.||||  
BL02533___kap    279 CTCAGCTTTGAGCCGCTTAAA---AA--CGGATCTGCAAAACGATTCGTC    323

BSNT_04635___    322 -GAGT---GGGCAAAGCGCTCCCTT---CATAATC-TGGACATTTTAGAA    363
                      ||.|   .||||||   .||.|||   |.||.|| |||.|    |.|||
BL02533___kap    324 CGAATACGCGGCAAA---ATCGCTTGAGCTTATTCATGGGC----TTGAA    366

BSNT_04635___    364 AAAGAATATTTTAACCAGC---CATAA    387
                     |||||||||||   ||.||   .||||
BL02533___kap    367 AAAGAATATTT---CCTGCACAAATAA    390


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