Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04638 and BL02534
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:47
# Commandline: needle
# -asequence dna-align/BSNT_04638.1.5803.seq
# -bsequence dna-align/BL02534___yuxJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04638-BL02534___yuxJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04638-BL02534___yuxJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04638
# 2: BL02534___yuxJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1321
# Identity: 749/1321 (56.7%)
# Similarity: 749/1321 (56.7%)
# Gaps: 311/1321 (23.5%)
# Score: 2272.0
#
#
#=======================================
BSNT_04638 0 -------------------------------------------------- 0
BL02534___yux 1 ATGCAGCTTTCGCATTTCATTTATAATGAAAGGGAATTCAAATTTTTTAA 50
BSNT_04638 0 -------------------------------------------------- 0
BL02534___yux 51 GAAGGTGATTCGCATCTCTGTTTATAAGAAAAACCTTGTGATCATGTGGT 100
BSNT_04638 0 -------------------------------------------------- 0
BL02534___yux 101 TTGCGAATTTTTTCGTGGCCGCAAGCTCCACAATGGTTCTGCCGTTTCTT 150
BSNT_04638 0 -------------------------------------------------- 0
BL02534___yux 151 TCCCTCTATATTGAGACGCTTGGCAGCTATTCGGACGGATTTACGGCAAA 200
BSNT_04638 1 -------------GTGTTCGGCATTACATTTCTCATGGCGTTTTTGGTAT 37
||.||||||.|.||||||.|.|||||.|||||.||.|
BL02534___yux 201 ATGGAGCGGATACGTTTTCGGCGTCACATTTTTGATGGCCTTTTTAGTTT 250
BSNT_04638 38 CCCCGTTTTGGGGACGGTTCGGAGACAAACGCGGATACAAGAAAATCC-- 85
|.||.|||||||||.|||||||.||.||||.|||.||.||.|||||||
BL02534___yux 251 CTCCTTTTTGGGGAAGGTTCGGCGATAAACACGGCTATAAAAAAATCCTC 300
BSNT_04638 86 ----TTATGGCAACCGGAACGGGCATTGCCCTCAGCATT-TTCTTCATGG 130
|.|.||..|||||||..||||.|.| |||| ||| |||||.
BL02534___yux 301 TTGATCACGGGTACCGGAATCGGCACTTC------CATTCTTC-TCATGT 343
BSNT_04638 131 GCTTTGTTACATCGGTGTACCAATTGTTTTTTCTGCGTATGGCAATGGGT 180
.|.||||..|.||.||.|||.|..||||||||.||.|.|||||.|||||.
BL02534___yux 344 CCCTTGTCTCGTCCGTATACGAGCTGTTTTTTTTGAGAATGGCGATGGGG 393
BSNT_04638 181 CTTGTAACCGGATTCATCCCGACATCTCTTGCGATGATTTCGGCACAGAC 230
||.||.|||||.|||||.||.||.||.|||||.|||||||||||.|||||
BL02534___yux 394 CTCGTCACCGGGTTCATTCCCACTTCCCTTGCCATGATTTCGGCTCAGAC 443
BSNT_04638 231 TCCGAAGAGCTCAGCCGGCAAAACGCTTGGCACGCTGCAAATGGGGCA-A 279
.|||||.|...|.||.||||||..|||.|||||||||||.|| ||||| .
BL02534___yux 444 GCCGAAAAAAACGGCTGGCAAAGTGCTCGGCACGCTGCAGAT-GGGCACG 492
BSNT_04638 280 GTGTCCGGAAGCTTGTTCGGCCCGCTT-TTGGGAGGCATGCTTGCTGATC 328
||.||.|||.|.||.|||||||| ||| .|.||.||..||||.||.||||
BL02534___yux 493 GTCTCGGGAGGATTATTCGGCCC-CTTGCTCGGCGGTCTGCTCGCCGATC 541
BSNT_04638 329 GTTTCGGCTTTACGTATACCTTTTTTATCACATCCTTTGTAATTTTC-TC 377
|..||||.|||||.|||||.|||||.||.||.||.||||..||||.| .|
BL02534___yux 542 GCGTCGGTTTTACATATACGTTTTTCATTACGTCATTTGCGATTTACAGC 591
BSNT_04638 378 GTCTGTTCTTCTCGTGTTATTTGGTGTCAAAGAAAAGCCTCT--TGCAGA 425
| |.|||.|.||||||||....||.||....|||..|||.|| .||||
BL02534___yux 592 G-CGGTTTTCCTCGTGTTTGCCGGAGTGCGCGAACGGCCCCTGAAGCAG- 639
BSNT_04638 426 GAAAACAGCCAAACGTACGTC--ATACTCGAGAAAAGAAGTGCTCTCCTA 473
||..||.|..|.|.||.| .|||.|||||||..|.|| |||.| |
BL02534___yux 640 ---AAGCGCGATGCTTCCGCCGGGTACACGAGAAAGCAGGT--TCTGC-A 683
BSNT_04638 474 ---TATTTTTCACCATCCGGCGCTGTGGGTCA---TGATGCTGTTAACCA 517
.|||.|.||.||.|...|||| |.||| .||||.|..|.|||
BL02534___yux 684 GACGATTCTGCATCAGCGTCCGCT---GATCACGGCGATGATCCTCACC- 729
BSNT_04638 518 TGC--TGATTCAAACAGGCAATTTCAGTATCCAGCCCCTGCTCGCTTTAT 565
|| ||||||||...||.||.||||||.|.|||||.|||||||||||||
BL02534___yux 730 -GCTGTGATTCAAGTGGGAAACTTCAGTGTTCAGCCGCTGCTCGCTTTAT 778
BSNT_04638 566 ATGTAAATGAGCTGCACGGACCTGTCAATCTTGCCTTTTTCTCCGGCATG 615
|.||.|..||.|||||||||.||...|||||.||.|||||.||.||..||
BL02534___yux 779 ACGTCAGCGAACTGCACGGAACTCAGAATCTCGCATTTTTTTCAGGGCTG 828
BSNT_04638 616 GCATTTTCAGCAACGGGGCTCGGAAGTTTGCT-GCTGGCTAGAAAATGGG 664
||.|||||.|||||.||.||.|||||..|||| ||| ||.||||||||||
BL02534___yux 829 GCTTTTTCTGCAACCGGCCTTGGAAGCCTGCTCGCT-GCGAGAAAATGGG 877
BSNT_04638 665 GTGATCTGGGCGACCGCTACGGCCACCGCCGCATTTTAATCGGACTTTT- 713
|.|.|.||||||||||.|.|||||||.|....||.||.|| || ||.|
BL02534___yux 878 GCGCTTTGGGCGACCGGTTCGGCCACGGAAAAATATTGAT--GA-TTCTC 924
BSNT_04638 714 --GCTCGCCGCCTCTTTCTTTTTTATTCCGCAGGCGCTCGCGTCCTCACT 761
|||.||.|||.|..|.|...||||.|||||.|..||..|.| ||
BL02534___yux 925 GCGCTGGCTGCCGCGGTTTGCGTTATCCCGCAAGGACTTACAT-----CT 969
BSNT_04638 762 CAGCGTG---CTCCT-TGTT-TTCAGATTTTTATTCGGAATGGCGATGGG 806
|||..|| |.|.| |||| |||.|.|||.|.||||||||.||..|.||
BL02534___yux 970 CAGTATGAAACGCTTGTGTTCTTCCGCTTTCTGTTCGGAATCGCACTTGG 1019
BSNT_04638 807 CGGTTTGCTGCCATGCATTACGGCAGCGATCCGCGTTCAGGCTCCCGGCA 856
|||..||.|.||.|||||.||.||....|||||.|||.|..|.||.||
BL02534___yux 1020 CGGGATGATTCCCTGCATCACCGCTTTAATCCGGGTTGAATCACCGGG-- 1067
BSNT_04638 857 GC--ATTCAGGGTGAAGTTCTCGGCTACAATGTCAGCTTTC-GCTTTTTA 903
|| ||.||.||.|||||.||.|||||.|||||.|| |||| |.||||||
BL02534___yux 1068 GCCTATACAAGGAGAAGTGCTTGGCTATAATGTAAG-TTTCAGATTTTTA 1116
BSNT_04638 904 GGAAACGTGCTCGGGCCTCTGCTCGGGGGAATCATATCGAGCCATTTTAC 953
||.||.||..||||.||..|||||||.||.|||.|.||.||| ||||.|
BL02534___yux 1117 GGCAATGTCATCGGCCCGGTGCTCGGCGGCATCCTTTCCAGC--TTTTTC 1164
BSNT_04638 954 --CATTTCGGCCACCTTTTACGTCACGGCGTTTCTCTTTTTCGCCGGCGC 1001
.|||||..||.|||||||||..||.||..|.||||||||||.|||.||
BL02534___yux 1165 GGTATTTCTTCCGCCTTTTACGCAACTGCAGTCCTCTTTTTCGGCGGAGC 1214
BSNT_04638 1002 CTGCATGCTT-TGGATCATG------------CAGAAACTTCGGAAAGAT 1038
.||| ||| || ||| |||.|| |||.|.
BL02534___yux 1215 ATGC---CTTCTG----ATGTTCCAAAGGTCCCAGCAA------AAAAAA 1251
BSNT_04638 1039 TCTTATGCCAAAGCAAGCTGA 1059
||..|.||.||||||||||||
BL02534___yux 1252 TCAGAGGCGAAAGCAAGCTGA 1272
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