Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04563 and BL02562

See Amino acid alignment / Visit BSNT_04563 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence dna-align/BSNT_04563___yuaD.1.5803.seq
#    -bsequence dna-align/BL02562___yuaD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04563___yuaD-BL02562___yuaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04563___yuaD-BL02562___yuaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04563___yuaD
# 2: BL02562___yuaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 628
# Identity:     400/628 (63.7%)
# Similarity:   400/628 (63.7%)
# Gaps:          95/628 (15.1%)
# Score: 1223.0
# 
#
#=======================================

BSNT_04563___      1 ATGTGGAAGCGGATGACTGCAAAAGCGGAAGGCT-------------TAT     37
                     |||||||||             |||||.|.||||             |||
BL02562___yua      1 ATGTGGAAG-------------AAGCGCACGGCTGTGGCGGAGCACGTAT     37

BSNT_04563___     38 ATATCGCAGAAACAGAAAGC----TTCGTAACAAAGCAAATGGACAAGCT     83
                     |.||.||.||.||    |||    ||.||.|||.||.||..||..|||.|
BL02562___yua     38 ACATAGCGGACAC----AGCGTCATTTGTGACAGAGAAACAGGCAAAGAT     83

BSNT_04563___     84 TGATTTTGATTATGGCGGCATCCCCGGCGACTTGCATTTTGGCCTGACCA    133
                     .|...|.|||||.||.|||||.||.||.||..||||||||||.|||||.|
BL02562___yua     84 CGTAATCGATTACGGGGGCATACCGGGGGATCTGCATTTTGGACTGACGA    133

BSNT_04563___    134 AAAAAGCGGGAGCCAGAGAACCAATGTTTTCAAGAGGGACTGAAATTTTC    183
                     |||||||.||.||.||.||.||.||||.|..||||||.||.||.||||||
BL02562___yua    134 AAAAAGCCGGGGCAAGGGAGCCGATGTATAAAAGAGGAACGGAGATTTTC    183

BSNT_04563___    184 AACCGCAGACAAATTTCAATTGTTTCAATAGAGGAATGCAACGAAATCGC    233
                     |||.|.||.||.|||||.||.||.||..||||.||.|||...|||||.||
BL02562___yua    184 AACAGGAGGCAGATTTCTATCGTCTCGGTAGAAGAGTGCCTTGAAATTGC    233

BSNT_04563___    234 TTTAAAAATGGGAGTGCCGAGAATT----------TTGCCGGAATGGCTC    273
                              .|||..||.||..|||          || ||||||||||||
BL02562___yua    234 ---------CGGACGGCTGAACATTCCGGCGGTCCTT-CCGGAATGGCTC    273

BSNT_04563___    274 GGGGCGAATGTGGCAGTCAGCGGTATGCCAGATCTTACTTCATTAAAAGA    323
                     |||||.|||.|.|||.|.|||||..||||.|||.|.||.|||||||.|||
BL02562___yua    274 GGGGCCAATATCGCATTAAGCGGCCTGCCTGATTTAACCTCATTAAGAGA    323

BSNT_04563___    324 AGGAAGCCGGATTATTTTTCCGAGCGGAGCGGCTCTGCTGTGTGAGGGCG    373
                     |||||||.|.||..|||||||.|||||.||..||.||.||.|.|||||||
BL02562___yua    324 AGGAAGCAGAATCGTTTTTCCAAGCGGCGCCTCTTTGTTGAGCGAGGGCG    373

BSNT_04563___    374 AAAATGATCCGTGTATCCAGCCGGGAGAAGTCATTCAGTCCTATTATCCG    423
                     |.|||||.|||||.||.|||||.|||||||||||||||....|.|.|||.
BL02562___yua    374 AGAATGAGCCGTGCATTCAGCCCGGAGAAGTCATTCAGGAGCAGTTTCCC    423

BSNT_04563___    424 GACAAGCCGAAGCTGACGCCG-GCTTTCGTCCGCCACGCACTGGGCATTA    472
                     |||||.||||||||..|..|| ||||| ||.|||||.||..||||.|..|
BL02562___yua    424 GACAAACCGAAGCTTGCTTCGCGCTTT-GTGCGCCATGCGATGGGAAGAA    472

BSNT_04563___    473 GAGGGATTGTCTGTATTGTGGAGAGACCTGGTGCTGTT---TACACAGGT    519
                     |.||.||.|||||.||.||.|| |..||.||..|||.|   | || |||.
BL02562___yua    473 GGGGAATCGTCTGCATCGTTGA-ACGCCCGGGCCTGATCCAT-CA-AGGC    519

BSNT_04563___    520 GATGAAATAGAAGT-------TCATT--CCTATCAGCGA--AAAGTCAAA    558
                     ||..||..||||||       | |||  ||| .|.||.|  ||||    |
BL02562___yua    520 GACCAAGCAGAAGTGTGGGCGT-ATTCGCCT-GCTGCCATGAAAG----A    563

BSNT_04563___    559 CGAAAAGCAGAAAGGGTC---TGA----    579
                     ||..|         ||||   ||.    
BL02562___yua    564 CGCCA---------GGTCGTTTGCCTAG    582


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