Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04608 and BL02587

See Amino acid alignment / Visit BSNT_04608 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:45
# Commandline: needle
#    -asequence dna-align/BSNT_04608___yugS.1.5803.seq
#    -bsequence dna-align/BL02587___yugS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04608___yugS-BL02587___yugS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04608___yugS-BL02587___yugS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04608___yugS
# 2: BL02587___yugS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1331
# Identity:     960/1331 (72.1%)
# Similarity:   960/1331 (72.1%)
# Gaps:          82/1331 ( 6.2%)
# Score: 3375.0
# 
#
#=======================================

BSNT_04608___      1 TTGCTTATTTTACAAT----TGATCGCCATTTTTGTTTTGATTG--GCAT     44
                     |||..|||..| .|||    |..|||.||   |..||||.||||  ||  
BL02587___yug      1 TTGAATATCCT-GAATCTCATACTCGTCA---TACTTTTAATTGCAGC--     44

BSNT_04608___     45 TACGGCTGTTTTCGTTGCAGCGGAATTTGCGATCGTCAAAATTAGAGGTT     94
                     |||||||.|||||||||..||.||||||||||||||||||||..|.||..
BL02587___yug     45 TACGGCTTTTTTCGTTGTCGCCGAATTTGCGATCGTCAAAATCCGCGGCA     94

BSNT_04608___     95 CAAAAATCAATCAGCTCATCGAAAGCGGTGACAGCCGAGCACTAGCCGCA    144
                     ||||||||.||||||||.|.||||||||.||.|..||.||..|.||.|| 
BL02587___yug     95 CAAAAATCGATCAGCTCGTTGAAAGCGGGGATAAGCGGGCGATTGCGGC-    143

BSNT_04608___    145 CATAA-AATCATCTCCAATCTTGACGAGTATTTATCAGCCTGCCAGCTCG    193
                     ||.|| |.|..|..|.||||||||.||.|||||.||.|||||||||||||
BL02587___yug    144 CAAAAGAGTGGTGACAAATCTTGATGAATATTTGTCTGCCTGCCAGCTCG    193

BSNT_04608___    194 GGATTACGATTACAGCCCTCGGCCTTGGGTGGCTTGGTGAACCTACATTT    243
                     |.|||||.||.||.||..|.||.||.||.|||||.||.|||.|.|||||.
BL02587___yug    194 GCATTACCATCACCGCATTAGGGCTCGGCTGGCTCGGAGAATCGACATTC    243

BSNT_04608___    244 GAACGTTTTCTTCATCCC----------TTATTTACAATGACAGGCATGC    283
                     ||||...|..|||| |||          ||||||         |||.|||
BL02587___yug    244 GAACAGATCATTCA-CCCGCTTTTTGAGTTATTT---------GGCCTGC    283

BSNT_04608___    284 CGGA-ACCGTTTAACCACATTGTCACATTT--GTAGTT---GCATTTATC    327
                     |.|| .||||||.|  |.|.||.|    ||  ||.|||   |||||||||
BL02587___yug    284 CTGAGTCCGTTTTA--AGAGTGGC----TTCGGTTGTTGCCGCATTTATC    327

BSNT_04608___    328 ATCGTCACTTTTTTGCATGTGGTGATGGGGGAGCTTGCCCCGAAAACGGT    377
                     |||.|.||.||||||||.||.|||.|.||.||||||||.||.|||||..|
BL02587___yug    328 ATCATTACATTTTTGCACGTTGTGGTCGGCGAGCTTGCGCCAAAAACAAT    377

BSNT_04608___    378 TTCTATTCAAAAAGCTGAAGCTGTAAGCTTATGGATTGCAAAGCCGCTGA    427
                     |.|.|||||||||||.|||||.||.||||||||||..||.||||||||.|
BL02587___yug    378 TGCGATTCAAAAAGCGGAAGCCGTCAGCTTATGGACGGCGAAGCCGCTCA    427

BSNT_04608___    428 TCTGGTTTTATAAAATCACGTACCCGTTTATTAAAGCATTAAACGGCTCT    477
                     |.|.||||||||||||||.||..||||||||.|||...||.||.|||||.
BL02587___yug    428 TTTTGTTTTATAAAATCATGTTTCCGTTTATCAAACTGTTGAATGGCTCG    477

BSNT_04608___    478 GCAAGTTTTCTTGT----GAAATTGTTTGGCTTTCATTCAGTAAAGGAGC    523
                     ||..|    ..|||    |||..||||.||.||.|||||.||.||.||||
BL02587___yug    478 GCCCG----GCTGTTAACGAAGCTGTTCGGGTTCCATTCTGTTAAAGAGC    523

BSNT_04608___    524 ATCAGGTTGTCATCAGCGAGGAGGAACTAAGACTGATCCTTTCAGAAAGC    573
                     ||.|.||.|..|||||.|||||.||.||..|.||.||.||.||.||||||
BL02587___yug    524 ATGAAGTGGCGATCAGTGAGGAAGAGCTGCGGCTTATGCTGTCTGAAAGC    573

BSNT_04608___    574 TATGAAAAGGGAGAAATCAATCAGTCTGAATTCCGT-----TATGTAAAT    618
                     |||.||||.||.|||||||||||||||||     ||     ||.||.||.
BL02587___yug    574 TATAAAAAAGGGGAAATCAATCAGTCTGA-----GTATAAATACGTCAAC    618

BSNT_04608___    619 AAGATTTTTGAATTTGACAACCGGGTAGCGAGAGAGATTATGATTCCGCG    668
                     ||.||||||||||||||||||.||.|.||..|.||.||.|||.|.|||.|
BL02587___yug    619 AAAATTTTTGAATTTGACAACAGGCTGGCCCGGGAAATCATGGTGCCGAG    668

BSNT_04608___    669 GACAGAAATTG---CGGTTATCTCTCTGGAGCAGTCGCTTGAAGAGGCAA    715
                     .||.||.||.|   ||.||||..|   .||.||.||..|..||||.||.|
BL02587___yug    669 AACGGAGATGGCGACGCTTATGGC---CGATCAATCCATAAAAGAAGCGA    715

BSNT_04608___    716 TTCATCACATCATTAATGAACGGTATACACGCTACCCTGTCATCAAAGAT    765
                     ||.|...|.|||||||||||||.||.||..|.||.||.||.||.||.||.
BL02587___yug    716 TTGAAACCGTCATTAATGAACGCTACACGAGATATCCGGTTATTAAGGAC    765

BSNT_04608___    766 GACAAGGATCATATTTTAGGGATCATCAACAGCAAAGATATGTTTAAAGC    815
                     ||.||.||.||||||.|.||.||..||||||||||.||..||||||||.|
BL02587___yug    766 GATAAAGACCATATTATCGGAATTGTCAACAGCAAGGACTTGTTTAAATC    815

BSNT_04608___    816 TTATTTTCTCGGCCAGCCGA------TAAAGCTGGAGCAAATCATGAGGC    859
                     .||||||||||.|.||.|||      |||  |||    |..|.|||||||
BL02587___yug    816 GTATTTTCTCGACGAGACGATTCCTTTAA--CTG----ACTTAATGAGGC    859

BSNT_04608___    860 CCGTTATCAGGGTCATTGAAAGCATTCCTGTTCAACAGCTTTTAATCCGC    909
                     |.||.||||||||.|||||.|.|||.||..|.||..||||.||.||.|||
BL02587___yug    860 CTGTCATCAGGGTGATTGAGAACATACCGATCCAGGAGCTCTTGATTCGC    909

BSNT_04608___    910 ATGCAGAAGGAACGGATTCACATGGCGATTCTCGTAGATGAATACGGGGG    959
                     |||||||||||||||||.||.|||||.|||||.||.|||||.|||||.||
BL02587___yug    910 ATGCAGAAGGAACGGATCCATATGGCCATTCTTGTTGATGAGTACGGCGG    959

BSNT_04608___    960 AACGGCGGGGCTTGTCACTGTAGAGGATATTATAGAGGAAATCGTCGGGG   1009
                     ||||||.|||||.||.||.|||||.||.||..||||||||||||||||.|
BL02587___yug    960 AACGGCAGGGCTGGTTACGGTAGAAGACATATTAGAGGAAATCGTCGGAG   1009

BSNT_04608___   1010 AAATCCGCGATGAGTATGATCAAGATGAAACACCGCACATCCTGAAAAAG   1059
                     |||||.|.|||||||.||||||.||.||||..||||||||..|.|||||.
BL02587___yug   1010 AAATCAGGGATGAGTTTGATCAGGACGAAATGCCGCACATTATAAAAAAA   1059

BSNT_04608___   1060 GGCGAGCACCATTATGTGATGGATGGAAAAGCGCTAATAGACGAAGTGAA   1109
                     |||||.||.||||||.|.|||||.||||||||..||||.|||||||||||
BL02587___yug   1060 GGCGAACATCATTATATTATGGACGGAAAAGCTTTAATCGACGAAGTGAA   1109

BSNT_04608___   1110 TGACCTTCTCGACATTGCGATTGAAAATGAAGAAATTGATACGATTGCAG   1159
                     ||||||.||..|.||.|||||.|||||.||||||.|.||||||||.||.|
BL02587___yug   1110 TGACCTCCTTCATATCGCGATAGAAAACGAAGAAGTCGATACGATCGCCG   1159

BSNT_04608___   1160 GCTGGCTTCTAACGCAAAAAATGGAACTGAAAGCAGGAGATGTGATACAA   1209
                     ||||||||.|.||||||||.|||||.||||||...||.||..|..|..||
BL02587___yug   1160 GCTGGCTTTTGACGCAAAAGATGGAGCTGAAAAACGGGGACATCCTTAAA   1209

BSNT_04608___   1210 GCGGAGGGCTGTGAATTTAAAATCCTCGACGCCGAAGATCATCACATCCG   1259
                     .|.|||||.||.|||||||||||.||.||.||.|||||||||||.|||||
BL02587___yug   1210 ACTGAGGGGTGCGAATTTAAAATTCTTGATGCTGAAGATCATCATATCCG   1259

BSNT_04608___   1260 TTTTGTAGAAATTAAAAAAACTGATTTTTAA   1290
                     |||..|.|||.|.||||||||.|||||||||
BL02587___yug   1260 TTTCATCGAAGTGAAAAAAACGGATTTTTAA   1290


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