Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01985 and BL02628

See Amino acid alignment / Visit BSNT_01985 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:31
# Commandline: needle
#    -asequence dna-align/BSNT_01985___yjcK.1.5803.seq
#    -bsequence dna-align/BL02628___yjcK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01985___yjcK-BL02628___yjcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01985___yjcK-BL02628___yjcK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01985___yjcK
# 2: BL02628___yjcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 575
# Identity:     369/575 (64.2%)
# Similarity:   369/575 (64.2%)
# Gaps:          61/575 (10.6%)
# Score: 1068.0
# 
#
#=======================================

BSNT_01985___      1 ATG-TTAAAA---GGAAAAACCATTTATGTTAGACCTTTAGAAG-TAACG     45
                     ||| ||||||   |||.||| ||||||..|.||.||       | |.|||
BL02628___yjc      1 ATGATTAAAAAAGGGACAAA-CATTTACATCAGGCC-------GCTCACG     42

BSNT_01985___     46 ------GATGCCGAAGAAAATTTGCGGC----TGCAAAGCGAAAATCGGG     85
                           ||.|||||.|.|    |||..|    ||||.|.||.|||.||..
BL02628___yjc     43 GCTGAAGACGCCGAGGCA----TGCCTCGAATTGCAGAACGCAAACCGCC     88

BSNT_01985___     86 ATTTTTTCGAACAATTTTCTATGATACGCACAGACGATTACTATACGGTT    135
                     ..||.||.|||||.|||||.|||...||.|..||.||.|..|||||..|.
BL02628___yjc     89 CGTTCTTTGAACAGTTTTCAATGGAGCGGAACGAGGAGTTTTATACAATC    138

BSNT_01985___    136 GAGGGGC-AAAGAAAACGAATAACCGAGTATCAGGAAAGACTTGAGAAAG    184
                     ||.||.| ||||||.|.|..|.|..||.||| |.||||...|.|||||.|
BL02628___yjc    139 GAAGGACAAAAGAAGAGGCTTCAAAGATTAT-ATGAAAATATGGAGAACG    187

BSNT_01985___    185 ATGAAGAATATCATTTTGGCATCTTTACAGCGTCAGACGATAGATTAATC    234
                     |||||||.|||.||||||||||||||....||.||.|||||....|.|||
BL02628___yjc    188 ATGAAGATTATTATTTTGGCATCTTTGATCCGGCAAACGATGCGCTGATC    237

BSNT_01985___    235 GGGACGGTTTCGCTCTTTCAAATCATCCGTGGAGCGC-------TGCAAA    277
                     ||.|||.|....||.||.|||       |||..||||       ||||||
BL02628___yjc    238 GGAACGATCAACCTTTTCCAA-------GTGCTGCGCGGTTCCTTGCAAA    280

BSNT_01985___    278 CTGCGTTCATTGGGTATTTTTTAGA-CA-AAGCCCATAATGG-AAAGGAT    324
                     ..||.|||||.||.||||||||.|| || |||  ||.||.|| |||||.|
BL02628___yjc    281 GCGCCTTCATCGGCTATTTTTTGGATCAGAAG--CACAACGGCAAAGGCT    328

BSNT_01985___    325 ATTATGACAGAGGCAGTCAGATTGGTTGTTGATTATGCGTTCCACGAATT    374
                     | .|.|||.||.||.||||...||.|.||.||.|..||.||.|||||..|
BL02628___yjc    329 A-CACGACCGAAGCCGTCAAGCTGATGGTCGAGTTCGCCTTTCACGATCT    377

BSNT_01985___    375 GAAACTGCATCGGATTGAAGCCGGTGTGATGCCCCGTAATCTCGGGTCCA    424
                     .||.||.|||||.||.||||||||.||.||||||||||||.|.|..||.|
BL02628___yjc    378 CAAGCTCCATCGCATCGAAGCCGGCGTCATGCCCCGTAATATTGCCTCGA    427

BSNT_01985___    425 TGCGTGTTTTAGAAAAAGCGGGATTTCATAAAGAAGGCATCGCCCGAAAA    474
                     |.||.||..|.||.||.|||||.|||||.|||||||||||||||||.|||
BL02628___yjc    428 TCCGGGTGCTGGAGAAGGCGGGTTTTCACAAAGAAGGCATCGCCCGGAAA    477

BSNT_01985___    475 AATGTAAAAATTAATGGCGTTTGGGAGGATCATCAAGTCCTTGCGATTCT    524
                     ||.||.||.||.||.||....|||||.||||||||..|.||.||..|..|
BL02628___yjc    478 AACGTCAAGATCAACGGAAAATGGGAAGATCATCAGCTGCTGGCTGTGAT    527

BSNT_01985___    525 GAATCC---TGATGACGAACAATAA    546
                     .|||||   ||||.|.         
BL02628___yjc    528 CAATCCGCATGATTAG---------    543


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