Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01981 and BL02660

See Amino acid alignment / Visit BSNT_01981 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:31
# Commandline: needle
#    -asequence dna-align/BSNT_01981___yjcI.1.5803.seq
#    -bsequence dna-align/BL02660___yjcI.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01981___yjcI-BL02660___yjcI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01981___yjcI-BL02660___yjcI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01981___yjcI
# 2: BL02660___yjcI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1178
# Identity:     872/1178 (74.0%)
# Similarity:   872/1178 (74.0%)
# Gaps:          85/1178 ( 7.2%)
# Score: 3219.0
# 
#
#=======================================

BSNT_01981___      1 TTGAAAAGGGAAGGTGTCAGCTATATGTCACAGCACGTTGAAACGAAATT     50
                                             |||.|..|.||.||..||||.|...|
BL02660___yjc      1 ------------------------ATGACTGAACATGTACAAACAACGCT     26

BSNT_01981___     51 AGCTCAAATTGGGAACCGTAGCGATGAAGTCACGGGAACAGTGAGTGCTC    100
                     .||.|||||.||.|||||.||.||.|||.|.||.|||||.||.|.|.|||
BL02660___yjc     27 GGCGCAAATCGGCAACCGCAGTGACGAAATAACCGGAACCGTCAATCCTC     76

BSNT_01981___    101 CTATCTATTTATCAACAGCATACCGCCACAGAGGGATCGGAGAATCTACC    150
                     |..|.|||||.||..|.||.|||.|.||||.|||.|||||.|||||.||.
BL02660___yjc     77 CCGTTTATTTCTCTTCTGCGTACAGGCACAAAGGAATCGGGGAATCCACA    126

BSNT_01981___    151 GGATTTGATTATGTCCGCACAAAAAATCCGACACGCCAGCTTGTTGAGGA    200
                     |||||||||||..|.||||||||||||||||||.|.||||||||.||.||
BL02660___yjc    127 GGATTTGATTACATTCGCACAAAAAATCCGACAAGACAGCTTGTAGAAGA    176

BSNT_01981___    201 CGCGATCGCTAACTTAGAA-----AACGGCGCGAGAGGGC-TTGCCTTTA    244
                     .||.|||||.||..|||||     ||| ||||     ||| ||||.||.|
BL02660___yjc    177 TGCAATCGCGAAACTAGAAGGGGGAAC-GCGC-----GGCTTTGCGTTCA    220

BSNT_01981___    245 GTTCGGGAATGGCTGCTATCCAAACGATTATGGCGCTGTTTAAAAGCGGA    294
                     ||||.||.||||||||.||.||.|||||.|||||.||||||.|||||||.
BL02660___yjc    221 GTTCTGGTATGGCTGCCATTCAGACGATCATGGCTCTGTTTCAAAGCGGG    270

BSNT_01981___    295 GATGAACTGATCGTTTCATCGGACCTATATGGCGGCACGTACCGTTTATT    344
                     |||||.||.|||||||||||.||..||||.||.||.||.|||||..|.||
BL02660___yjc    271 GATGAGCTCATCGTTTCATCCGATTTATACGGGGGAACATACCGCCTTTT    320

BSNT_01981___    345 TGAAAATGAATGGAAAAAATACGGATTG-ACTTTTCATTATGATGA--TT    391
                     ||||||.||||||||.|||||||||.|| .|||||.| ||.|||||  ||
BL02660___yjc    321 TGAAAACGAATGGAAGAAATACGGACTGCGCTTTTTA-TACGATGATTTT    369

BSNT_01981___    392 TCAGCGATGAGGACTGT-TTACGCTCTAAGATTACGCCGAATACAAAAGC    440
                     |||  ||.||.|||||| |.|.| ||.||.||.|||...|||||.||.||
BL02660___yjc    370 TCA--GACGAAGACTGTATCAAG-TCGAAAATCACGGACAATACGAAGGC    416

BSNT_01981___    441 GGTGTTTGTGGAAACGCCGACAAACCCCCTTATGCAGGAGGCGGACATTG    490
                     ..|||||||.||||||||||||||.||.||.||||||||.||.||||||.
BL02660___yjc    417 ACTGTTTGTAGAAACGCCGACAAATCCGCTCATGCAGGAAGCAGACATTC    466

BSNT_01981___    491 AACATATTGCCCGGATTACAAAGGAGCACGGTCTT-CTGCTGATTGTAGA    539
                     ||.|.|||||.|..||..|.||.|||.|| |.||| |||||.|||||.||
BL02660___yjc    467 AAAAAATTGCGCAAATCGCCAAAGAGAAC-GACTTGCTGCTCATTGTCGA    515

BSNT_01981___    540 TAATACATTTTATACACCGGTCTTGCAGCGGCCGCTTGAGCTGGGAGCTG    589
                     .|||||.||||||||||||||..||||..|||||.|||||||.||.||||
BL02660___yjc    516 CAATACGTTTTATACACCGGTTCTGCAAAGGCCGATTGAGCTAGGCGCTG    565

BSNT_01981___    590 ACATTGTCATTCACAGCGCAACCAAGTATTTAGGCGGGCATAACGATCTG    639
                     |..||||||||||||||||.||.||||||||.|||||.|||||||||||.
BL02660___yjc    566 ATCTTGTCATTCACAGCGCGACGAAGTATTTGGGCGGTCATAACGATCTT    615

BSNT_01981___    640 CTTGCTGGACTTGTCGT-------GGTGAAGGATGAGC-GGCTCGGAGAG    681
                     .|.||.||.||||||||       ||.|||    |||| |.||    |||
BL02660___yjc    616 TTGGCGGGGCTTGTCGTCGCAAAAGGCGAA----GAGCTGTCT----GAG    657

BSNT_01981___    682 GAAATGTTTCAGCATCAAAATGCAATCGGCGCCGTCCTGCCGCCATTTGA    731
                     ||||||||.|||||.||||||||.||||||||.||..|..||||.||.||
BL02660___yjc    658 GAAATGTTCCAGCACCAAAATGCCATCGGCGCGGTTTTATCGCCGTTCGA    707

BSNT_01981___    732 TTCGTGGCTTCTGATGAGAGGAATGAAGACGCTGAGC-CTCAGAATGCGT    780
                     |||||||||..|.||||||||..|||||||||| .|| ||.||.|||.|.
BL02660___yjc    708 TTCGTGGCTCTTAATGAGAGGGTTGAAGACGCT-CGCTCTTAGGATGAGA    756

BSNT_01981___    781 CAGCATCAGGCAAACGCGCAGGAGCTTGCGGCGTTTTTAGAAGAGCAGGA    830
                     ||||||||||.||||||||.||||||.|||||.|||||.|||||||||||
BL02660___yjc    757 CAGCATCAGGAAAACGCGCGGGAGCTCGCGGCCTTTTTGGAAGAGCAGGA    806

BSNT_01981___    831 AGAAATTTCGGATGTGCTGTATCCCGGAAAAGGCGGCATGCTGTCCTTCC    880
                     .||||||.|.|||||.||.|||||.||||||||||||||||||||.||||
BL02660___yjc    807 GGAAATTGCCGATGTTCTTTATCCGGGAAAAGGCGGCATGCTGTCATTCC    856

BSNT_01981___    881 GTCTGCAAAAAGAAGAATGGGTCAATCCGTTTTTAAAAGCACTGAAGACC    930
                     |..|.|||||||||||||||||||||||||||.|||||...||.|||||.
BL02660___yjc    857 GCGTTCAAAAAGAAGAATGGGTCAATCCGTTTCTAAAAAATCTCAAGACG    906

BSNT_01981___    931 ATTTGTTTTGCAGAAAGCCTCGGCGGGGTGGAAAGCTTTATTACATACCC    980
                     ||.|||||.||.||||||||||||||.||.||||||||.||.||.|||||
BL02660___yjc    907 ATCTGTTTCGCCGAAAGCCTCGGCGGAGTCGAAAGCTTCATCACCTACCC    956

BSNT_01981___    981 TGCGACCCAGACGCACATGGATATTCCTGAAGAGATCCGCATCGCAAACG   1030
                     .|||||.|||||.|||||||||||.||.|||||.|||||.||.|||||||
BL02660___yjc    957 GGCGACACAGACCCACATGGATATCCCGGAAGACATCCGAATTGCAAACG   1006

BSNT_01981___   1031 GGGTGTGCAATCGGTTGCTGCGCTTTTCTGTCGGTATTGAACA----TGC   1076
                     |.||.|||||..||.|.|||||||||||.|||||.||.||.||    |.|
BL02660___yjc   1007 GCGTCTGCAACAGGCTTCTGCGCTTTTCAGTCGGAATCGAGCACGTCTCC   1056

BSNT_01981___   1077 GGAAGATTTAAAAGAGGATCTAAAACAGGCATT----ATGTCAGGTCAAA   1122
                         |||||.||..|||||||.|||...|||.|    |    |.||.|||
BL02660___yjc   1057 ----GATTTGAAGCAGGATCTCAAAGCTGCACTGGAAA----AAGTGAAA   1098

BSNT_01981___   1123 GAGGGA-GCTGTTTCTTTTGAGTAA---   1146
                     | |||| ||.|||.|...|||||.|   
BL02660___yjc   1099 G-GGGAGGCGGTTCCGCATGAGTCATGA   1125


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