Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01977 and BL02662

See Amino acid alignment / Visit BSNT_01977 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_01977___yjcF.1.5803.seq
#    -bsequence dna-align/BL02662___yjcF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01977___yjcF-BL02662___yjcF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01977___yjcF-BL02662___yjcF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01977___yjcF
# 2: BL02662___yjcF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 442
# Identity:     293/442 (66.3%)
# Similarity:   293/442 (66.3%)
# Gaps:          41/442 ( 9.3%)
# Score: 908.0
# 
#
#=======================================

BSNT_01977___      1 TTGAAAGCAGTTATCGCAAAAAATGAAGAACAACTGAAAGATGCATTCTA     50
                     .||.||||.||.||.|..||.|||.||.||||.||..||||.||.||||.
BL02662___yjc      1 GTGGAAGCCGTCATTGTGAAGAATCAACAACAGCTTGAAGACGCCTTCTT     50

BSNT_01977___     51 TGTAAGAGAAGAAGTCTTTGTCAAAGAACAAAACGTGCCTGCTGAAGAAG    100
                     |||.|||.|.|||||||||.||||.||.||..||||..|..|.|||||||
BL02662___yjc     51 TGTTAGAAAGGAAGTCTTTATCAAGGAGCAGCACGTATCACCGGAAGAAG    100

BSNT_01977___    101 AAATTGACGAACTTGAAAATGAGTCAGAGCATATCGTCGTGTATGACGGT    150
                     ||||.||..|.|||||..|.||.||....|||.|||||.|.|||||||..
BL02662___yjc    101 AAATGGATCATCTTGATCAGGAATCTTCACATCTCGTCATCTATGACGAA    150

BSNT_01977___    151 GAAAAGCCTGTCGGTGCCGGAAGATGGC--------GCATGAAGGACGGC    192
                     .||.||||..||||.||       ||||        ||.|| ..||||||
BL02662___yjc    151 AAAGAGCCGATCGGCGC-------TGGCCGGCTCCGGCTTG-TCGACGGC    192

BSNT_01977___    193 TACGGCAAGTTAGAGCGGATTTGCGTACTGAAAAGCCACCGCTCAGCCGG    242
                     ||||||||..|.||.||.||.||.||.|||||||||||||||||...|||
BL02662___yjc    193 TACGGCAAACTTGAACGAATCTGTGTGCTGAAAAGCCACCGCTCCCTCGG    242

BSNT_01977___    243 TGTCGGCGGCATCATTATGAAAGCGCTCGAA---AAAGCCGC--GGCAGA    287
                     .||||||..|.|.||.||..|.|||||.|||   .|||||||  .|||  
BL02662___yjc    243 CGTCGGCAACCTGATCATTCAGGCGCTTGAAGAGGAAGCCGCCAAGCA--    290

BSNT_01977___    288 CGGAGGCGCTTCCGGTTTCATTTTA-----AACGCGCAAACACAGGCTGT    332
                        ||||||     ||.|||.||||     ||||||||.|||||||||||
BL02662___yjc    291 ---AGGCGC-----GTCTCAATTTATGCTGAACGCGCAGACACAGGCTGT    332

BSNT_01977___    333 GCCGTTTTACAAGAAACACGGGTATCGCGTGCTTTCTGAAAAAGAATACC    382
                     .||.||||||.|.||||||||.|||...||..|.||||   |||||| ..
BL02662___yjc    333 TCCCTTTTACGAAAAACACGGCTATAAAGTCGTGTCTG---AAGAAT-TT    378

BSNT_01977___    383 TC-GATGCCGGCATTCCGCACTTACAAATGATGAAGGACTGA    423
                     || |||||....|||||.||..|..|||||.|.||..|.|.|
BL02662___yjc    379 TCAGATGCGAATATTCCCCATGTCAAAATGGTCAAAAAGTAA    420


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