Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01975 and BL02667
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_01975___yjcD.1.5803.seq
# -bsequence dna-align/BL02667___yjcD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01975___yjcD-BL02667___yjcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01975___yjcD-BL02667___yjcD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01975___yjcD
# 2: BL02667___yjcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2395
# Identity: 1610/2395 (67.2%)
# Similarity: 1610/2395 (67.2%)
# Gaps: 227/2395 ( 9.5%)
# Score: 5059.0
#
#
#=======================================
BSNT_01975___ 1 TTGAAATGCGCCCGACTGAATGATAGAATCATACATTTACATACATATTC 50
|||||||||||||||.|.|||.|..||..|||.|||.|||||||||||||
BL02667___yjc 1 TTGAAATGCGCCCGATTCAATAACCGAGACATTCATATACATACATATTC 50
BSNT_01975___ 51 GAGAGAACATTATCAATTCCTCTTTGAAGAGGGAATAAAAGGACATTTAT 100
|||||||||....||||||||||||||.||.|.||.|||| ||||
BL02667___yjc 51 GAGAGAACACCTGCAATTCCTCTTTGATGAAGCAAGAAAA-GACA----- 94
BSNT_01975___ 101 TTTGTTCTC--------ATTGCGGAAAGCCCGTTTTGTTACGGCTTAACA 142
.|.||.| |||||||...||| |.|..|.||.|| |
BL02667___yjc 95 --GGATCACGTGTAAATATTGCGGCTTGCC------GCTCAGACTGAA-A 135
BSNT_01975___ 143 TCGCCGATCC-------GCCAGAGTTTATCCATCGCCAGCCAGGCGATTT 185
|.|.||||.| |||..|.|||.||||.||..|....||.|||||
BL02667___yjc 136 TTGTCGATTCATGAAGAGCCGCATTTTTTCCACCGGGAAAACGGGGATTT 185
BSNT_01975___ 186 TCCGGCATGTGAGGAGGCGTGC--------GAACCGA---AGCCCTCTAA 224
|.|...||||||.|.|||.||| ||| || |||
BL02667___yjc 186 TTCTCAATGTGAAGCGGCTTGCTTAAATGAGAA--GACAGAGC------- 226
BSNT_01975___ 225 AGAGGAAAAAAAAGAAGACGAT----CAGGAATCTGGTGTCATTCGTTTA 270
|||.||..|||.||| ||||| |.|.||.| ||.||..|.||..|.
BL02667___yjc 227 AGAAGACCAAACAGA--ACGATTATACTGAAAGC-GGCGTTTTCCGCCTC 273
BSNT_01975___ 271 CCCAAGGGAAAAGCGATCGCCGCTGACCCGTCCCCA------GCTGTTAC 314
||.||.||.||||||||||..|..|| | ||.|..||
BL02667___yjc 274 CCGAAAGGCAAAGCGATCGGAGAGGA---------AAAGAAGGCGGACAC 314
BSNT_01975___ 315 GGAAT----GGCACCGTCCT--AGAAGCATTAAACCAGGAACACCATT-- 356
|||.| |.|.||| ||| .|||||.| ||| .|||||
BL02667___yjc 315 GGACTTCTGGACGCCG-CCTCGCGAAGCTT----CCA-----TCCATTCT 354
BSNT_01975___ 357 -----------TGTGCCAAAAACAATAGAACCCGATACGAGCC--TTTTT 393
.|.|.||.|||| |...||| ||.|| |.|||
BL02667___yjc 355 CCTTTCTCTCCAGCGGCAGAAAC----GGCTCCG----GAACCGGTCTTT 396
BSNT_01975___ 394 CCGTCTGT-CGGTTTAAACACGGATCAGCTGAAAGCTGTCACGGAAACAG 442
|||..||| |.|.|.||..| |.|.|||||....||.||.||||...|.|
BL02667___yjc 397 CCGAATGTGCCGCTGAATGA-GAAACAGCTTGCCGCCGTGACGGCCCCCG 445
BSNT_01975___ 443 AGGGCCCGCTGCTCGTGCTTGCAGGTGCGGGGAGCGGAAAAACACGGGTG 492
|.|..||.||.|||||.||.||.||.|||||.|||||||||||.|||||.
BL02667___yjc 446 AAGAACCCCTTCTCGTTCTGGCCGGCGCGGGAAGCGGAAAAACGCGGGTA 495
BSNT_01975___ 493 CTGACAGCCCGTGCCGCCCACATGATCGAACACTTAGGC-----ATACCG 537
.|.||.||.||.||.||..|.||||| |.|.| ||| ||.|||
BL02667___yjc 496 TTAACCGCGCGAGCGGCTTATATGAT--ATCCC---GGCTCGATATCCCG 540
BSNT_01975___ 538 CCTGAAAATATGC-----TGCTTGTCACCTTTACAACAAAAGCTGTCGCT 582
||| |.||| ||||.|||||.||.||.|||||||||||....
BL02667___yjc 541 CCT-----TCTGCCATATTGCTCGTCACATTCACGACAAAAGCTGTGAAA 585
BSNT_01975___ 583 GAAATGAAAGAGCGTATGGCCAACCAGTACGGATTACAGCCG--GCA-AA 629
||||||||||||||.||||||...|..|||||.|| |||| ||| |.
BL02667___yjc 586 GAAATGAAAGAGCGGATGGCCTCGCTATACGGTTT---GCCGATGCAGAC 632
BSNT_01975___ 630 AGTCAGAA--GACTTGTGACAGGAACATTCCACAGTCTGTTTTATAAGA- 676
.|| ||| |.||.||||||||.||.||||||||..|.|||||.||.|
BL02667___yjc 633 TGT--GAACCGCCTCGTGACAGGCACCTTCCACAGCTTTTTTTACAAAAT 680
BSNT_01975___ 677 TCTTGTATCACTC-TAATTCTGCTAAATGGAACGGTGAGCATCTGCTGAA 725
|||| ||||| || |.||.|.||.||||||||.||.|||||.||||||||
BL02667___yjc 681 TCTT-TATCA-TCATGATCCGGCCAAATGGAATGGCGAGCACCTGCTGAA 728
BSNT_01975___ 726 AATGGAGTGGCAGCGGGAACAATATATCAAAAAAGCACTCTATGAAGAAG 775
|..|||.|||||....|||||.||.|||||||..||.||....|||||||
BL02667___yjc 729 ATGGGAATGGCAAAAAGAACAGTACATCAAAATGGCCCTTGCCGAAGAAG 778
BSNT_01975___ 776 GCATCGATGAGAAAGAATTCCCAGTTGACCAAGCTCTGCAGCAGATCGGT 825
|..|.|||||.|||||.||.||.||||||||.||..|.|||||||||||.
BL02667___yjc 779 GGCTTGATGAAAAAGACTTTCCGGTTGACCAGGCGATCCAGCAGATCGGC 828
BSNT_01975___ 826 TTTTGGAAAAACACTTATGTCCCAAATGAACGCATCCCTCTAAAAGATGA 875
|..|||||.|||.|||||.|.||...|||||..||.||.||..||||.||
BL02667___yjc 829 TACTGGAAGAACGCTTATCTTCCGGGTGAACAGATTCCGCTTGAAGACGA 878
BSNT_01975___ 876 GTGGGAAAAACAAGTTTATCGTTTATATGAACATTATGAACGCCAGAAAA 925
.||||||||.|..|||.|.||..|.||....|||||||| ||||.|
BL02667___yjc 879 ATGGGAAAAGCGGGTTCACCGGCTGTACCGTCATTATGA-----AGAACA 923
BSNT_01975___ 926 AAGAACA------CAGCCAATTTGATTTTGATGACATGGCTTCAGCCTGC 969
||.|.|| | |||||||.|||||.||.||.|||||.||.||.|||
BL02667___yjc 924 AAAAGCAGCGCGGC-GCCAATTCGATTTCGACGATATGGCATCTGCGTGC 972
BSNT_01975___ 970 TATGAATTGTTTATCGAGCGGCCTGACCTTCTGGAACAATATCAATCTCG 1019
|...|..|||||...||.|.|||.|||.||.|..|.|.||||||..|.||
BL02667___yjc 973 TGGCAGCTGTTTCAAGAACAGCCGGACATTTTAAAGCGATATCAGACGCG 1022
BSNT_01975___ 1020 GTTT-ACGTATATCTTAATTGATGAGTTTCAGGACATTAATCCGGTTCAA 1068
.||| ||| ..||.||.|||||.||.||||||||||||||.||.||||||
BL02667___yjc 1023 CTTTCACG-CGATTTTGATTGACGAATTTCAGGACATTAACCCTGTTCAA 1071
BSNT_01975___ 1069 TACAAAATCATGCAAATGCTC---GCCAGCCCGGAGCAAAACCTGTGCTG 1115
|||...||||| ||| |||| ||.|||||.||..|.||||||..|||
BL02667___yjc 1072 TACGCCATCAT-CAA--GCTCTTGGCAAGCCCCGAAAACAACCTGACCTG 1118
BSNT_01975___ 1116 TGTCGGAGACGATGACCAGTCCATCTACGCGTTTCGCGGAAGCAATCCGT 1165
||||||.||.|||||.|||||.|||||||||||..|.||.||||.|||.|
BL02667___yjc 1119 TGTCGGGGATGATGATCAGTCAATCTACGCGTTCAGAGGGAGCAGTCCTT 1168
BSNT_01975___ 1166 CTTTCATTCTTGATTTTCAAAAGGATTATCCGGGAGCGAAGACGATCTAT 1215
||||.||.||.||||||.||||.|||||||||...|||||.|||.||...
BL02667___yjc 1169 CTTTTATACTCGATTTTGAAAAAGATTATCCGAAGGCGAAAACGGTCCGC 1218
BSNT_01975___ 1216 TTAACTGCGAACTACAGGTCTACGCACCCGATCGTCTCTAGTGCTGATAT 1265
.|.||..||||.|||||.||.|..||.|||||.||..|.||.||.|||||
BL02667___yjc 1219 CTCACGACGAATTACAGATCGAGCCATCCGATTGTGGCAAGCGCCGATAT 1268
BSNT_01975___ 1266 CGTTGTGAAAAAGAACAAAAACAGATATGCCAAAACGCTTGAAGCGGCCC 1315
.||.||.|..||.||||||||..|.|.|.|.|||| |.|.||||| ||
BL02667___yjc 1269 GGTCGTAAGGAAAAACAAAAAGCGTTTTCCGAAAA--CATTAAGCG--CC 1314
BSNT_01975___ 1316 GCGA-TGACATTCAGGTCC-----------CTGTGCTGTTTTATCCTTAT 1353
|||| .||| |.|| ||.| |.||||||||||||
BL02667___yjc 1315 GCGAGAGAC------GACCGCCAAAAACCGCTCT--TATTTTATCCTTAT 1356
BSNT_01975___ 1354 GATGAAGAGGAAGAAGCCACAATGGTCGTTTCCGATATCAAAGAAAAAAT 1403
|||||||||||||||||.|..|||.||||.||.||||||.||||||||||
BL02667___yjc 1357 GATGAAGAGGAAGAAGCGATTATGATCGTCTCTGATATCCAAGAAAAAAT 1406
BSNT_01975___ 1404 TCAAAATGGAGCCAGTCCAGAAGACTTTGCGGTTCTTTACCGCACAAACA 1453
|.|||..||.||.|..||.||.|||||.||..|.||.|||||.|||||||
BL02667___yjc 1407 TGAAATGGGCGCAAAGCCTGATGACTTCGCCATCCTATACCGGACAAACA 1456
BSNT_01975___ 1454 GCGGAGGCCGTGCTATATATGAAAGGCTTCATCAATCGTCAATTCCGTAT 1503
||.|.|||||.||.||.|.||||.|.||.||.||.||..|.||||||||.
BL02667___yjc 1457 GCAGCGGCCGCGCCATTTTTGAACGTCTGCACCAGTCAGCCATTCCGTAC 1506
BSNT_01975___ 1504 ACAGCTGACCGCGGCGTCCAATCGTTTTACAGCAGACGGATCGTCCGCCA 1553
||.|||||.|..|||||||..||||||||||||||..||||||||||.||
BL02667___yjc 1507 ACGGCTGAACAAGGCGTCCGGTCGTTTTACAGCAGGAGGATCGTCCGGCA 1556
BSNT_01975___ 1554 GATTCTCGCCTACTTGTACGCCAGCCAAAATGAGGATGATACCGAAGCGA 1603
|||.||.|||||..|.|||...|||||||||.|.|||||..|.|||||..
BL02667___yjc 1557 GATGCTGGCCTATCTCTACTTAAGCCAAAATCAAGATGACGCGGAAGCCG 1606
BSNT_01975___ 1604 TTAAACACTTGCTTCCCGCCTTGTTTTTAAAACAGTCCGCTTTGAATACG 1653
|.||.||..|..|.||||||.|.|||.|.||.|||||||||||.||.|||
BL02667___yjc 1607 TAAAGCAGATTTTACCCGCCCTCTTTCTCAAGCAGTCCGCTTTAAACACG 1656
BSNT_01975___ 1654 CTGAAGGCGCTCTCGATCACAGAGGACTGTACCATGATCAAAGCGCTGGC 1703
||.||.|||||||||||.|||||.||.||.||.|||.|..|.|||||.|.
BL02667___yjc 1657 CTTAAAGCGCTCTCGATTACAGAAGATTGCACAATGGTTCAGGCGCTTGA 1706
BSNT_01975___ 1704 CAAATTGCCTGATCTGAAGCCATTCCAGCTGGACAAAATCAAGAAAATCG 1753
.||||||.||||..|.||.||.||.|||||.||.|||||.||.|||||||
BL02667___yjc 1707 AAAATTGACTGACATTAAACCGTTTCAGCTTGATAAAATAAAAAAAATCG 1756
BSNT_01975___ 1754 TACCGTTTTTTGCAAGCCTCCGCACGATGAAGCCCGTAGAAGCCATCACC 1803
|.||.|||||..||.||.|....|||||||||||.||.|||||||||.|.
BL02667___yjc 1757 TTCCTTTTTTCCCAGGCTTAAAAACGATGAAGCCGGTTGAAGCCATCTCT 1806
BSNT_01975___ 1804 TTTGCAGAAGGAAAAATGGGCTTCTCCGAGTATTTAAAAAAGCGGGGCAA 1853
||.|||||||.|||.||||||||.|||||.||..|.||||||||.||.||
BL02667___yjc 1807 TTCGCAGAAGAAAAGATGGGCTTTTCCGATTACCTGAAAAAGCGCGGAAA 1856
BSNT_01975___ 1854 TGAGGGCAACAAGCTGGAAAAAGGTTCCGATGACCTGCGCGATATCAAGG 1903
.||.||.||||||||.||||||||.||.||.||.|||||.|||.||||..
BL02667___yjc 1857 CGAAGGGAACAAGCTCGAAAAAGGGTCTGACGATCTGCGGGATCTCAAAA 1906
BSNT_01975___ 1904 TTGTCGCCAAGAAGTTCAAAACGATTCCTGACTTTCTTGCCCACGTAGAC 1953
.||..||.||.||.|||||||||||.||.||.|||||||..||.||.||.
BL02667___yjc 1907 CTGCGGCAAAAAAATTCAAAACGATCCCCGAATTTCTTGAGCATGTCGAT 1956
BSNT_01975___ 1954 CATATGAGGGCCGCTGAGAA--AAACAG--AACGGATGAACATGGCGTTC 1999
||||||||.|||||.||.|| |||.|| .|||||| |.||.||||
BL02667___yjc 1957 CATATGAGAGCCGCGGAAAAGCAAAAAGCTGACGGAT----ACGGTGTTC 2002
BSNT_01975___ 2000 AGCTGATGACCATTCACCGGTCAAAAGGCCTTGAATTCAAAACAGTCTAC 2049
||||..||||.|||||.||..|.|||||.||||||||.|||||.|||||
BL02667___yjc 2003 AGCTTTTGACAATTCATCGTGCGAAAGGGCTTGAATTTAAAACGGTCTA- 2051
BSNT_01975___ 2050 GTGTTA----GGCACTGTA-GACGGTTCGATTCCGCACGATTTCTCATTA 2094
|| ||.|.||.| |||||.|||||||||||.||.||..|..|.
BL02667___yjc 2052 ----TATACTGGGAGTGCAGGACGGCTCGATTCCGCATGACTTTGCCCTG 2097
BSNT_01975___ 2095 GAAACGGCAAGAAAAGGAGACGAGGCCGCTCTTGAGGAGGAAAGACGCCT 2144
||.||.||.||||||||.||.||..||||||||||.||.||..|..|.||
BL02667___yjc 2098 GAGACAGCGAGAAAAGGCGATGAAACCGCTCTTGAAGAAGAGCGGAGGCT 2147
BSNT_01975___ 2145 TTTATATGTAGCCATGACCCGGGCGAA--ACAGCATTTATATTTGTCTTG 2192
..|.|||||.||||||||||||||..| ||.||.|.|||||..|..|
BL02667___yjc 2148 GCTGTATGTCGCCATGACCCGGGCCGAGGACCGCCTGTATATCAGCGT-- 2195
BSNT_01975___ 2193 CCCCGCTAACAGGCGCGGCAAAACAGCCAACCGCTCAAGATTTTTGTATC 2242
|||..|...|||..|.||.|.|||.||..||||||||||.|||||..|.|
BL02667___yjc 2196 CCCTTCCTTCAGAAGGGGAAGAACGGCATACCGCTCAAGGTTTTTACAGC 2245
BSNT_01975___ 2243 CCCTGCTA---CAGAA---AGCAAG-ACAGCCCTTGCATCATTAA 2280
|..|..|| |.||| | |||| .|||| |||| ||.|
BL02667___yjc 2246 CTATTTTACGCCCGAATCCA-CAAGTTCAGC---TGCA--ATAA- 2283
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