Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01969 and BL02677

See Amino acid alignment / Visit BSNT_01969 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:30
# Commandline: needle
#    -asequence dna-align/BSNT_01969___yjcA.1.5803.seq
#    -bsequence dna-align/BL02677___yjcA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01969___yjcA-BL02677___yjcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01969___yjcA-BL02677___yjcA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01969___yjcA
# 2: BL02677___yjcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 379
# Identity:     256/379 (67.5%)
# Similarity:   256/379 (67.5%)
# Gaps:          44/379 (11.6%)
# Score: 809.0
# 
#
#=======================================

BSNT_01969___      1 GTGGTTATAAATGGGCTGACAATTGT--------TCTTCTATCGCTTGCG     42
                     || |.||.|||   ||||....||.|        |.|||||||    |||
BL02677___yjc      1 GT-GATACAAA---GCTGGTTTTTATTTTTTTTATTTTCTATC----GCG     42

BSNT_01969___     43 GTCTTTCGGCTCGCCCGCCTGCTGGTGTTTGACACGATTATGGCGCCGCT     92
                     ||.||||||||..|..|.|||.|.|||||.||||||||.|||||||||.|
BL02677___yjc     43 GTATTTCGGCTGACGAGGCTGATTGTGTTCGACACGATCATGGCGCCGTT     92

BSNT_01969___     93 TCGCAGTCTGTTTCATGAAGAGAAGGAAGAAAAGGATGCG----GACGGG    138
                     |.|.||.|||||||||||||||...||||||||  |..||    .|||||
BL02677___yjc     93 TAGAAGCCTGTTTCATGAAGAGGTTGAAGAAAA--AAACGAAAAAACGGG    140

BSNT_01969___    139 A-ACATTGAAACCTATATCGTGATTAAGGGAACCGGTGTCAGGGCGTTTA    187
                     | |.|..|||||.|||.|.||.||.||.||||..||.||.||.||||...
BL02677___yjc    141 AGAGACCGAAACGTATCTTGTCATGAAAGGAAAAGGCGTGAGAGCGTGGG    190

BSNT_01969___    188 TTGGTGAATTGCTGAGCTGCTATTGGTGCACAGGCGTGTGGTGCGCCGGC    237
                     |.||.||..||||||||||||||||||||||.|||||||||||..|||..
BL02677___yjc    191 TCGGCGAGCTGCTGAGCTGCTATTGGTGCACGGGCGTGTGGTGTACCGCG    240

BSNT_01969___    238 TTTTTG-----ATTTTATGCCAGGCGTTGATCCCGCAA--GCGGCGCAGT    280
                     ||||||     .|||||.||    ..|||.|||.|..|  ||.|   |.|
BL02677___yjc    241 TTTTTGCTTGTTTTTTACGC----ATTTGTTCCGGTCATTGCTG---AAT    283

BSNT_01969___    281 GGCTGATTTTACT--TTTGGCGATCGCCGGCCTTGCCGGCATCATAGAAA    328
                     ||||||||.|.||  |||  |||||||||||||.||.||..|..|.||||
BL02677___yjc    284 GGCTGATTCTTCTGCTTT--CGATCGCCGGCCTGGCTGGAGTATTGGAAA    331

BSNT_01969___    329 CGCTCGTATCAAAATGGCTGCAAGAATAA    357
                     ||.||||.||.||||||||   .||.|.|
BL02677___yjc    332 CGATCGTTTCCAAATGGCT---CGATTGA    357


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