Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06248 and BL02694
See
Amino acid alignment /
Visit
BSNT_06248 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:12
# Commandline: needle
# -asequence dna-align/BSNT_06248___yyaS.1.5803.seq
# -bsequence dna-align/BL02694___yyaS.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06248___yyaS-BL02694___yyaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06248___yyaS-BL02694___yyaS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06248___yyaS
# 2: BL02694___yyaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 673
# Identity: 394/673 (58.5%)
# Similarity: 394/673 (58.5%)
# Gaps: 137/673 (20.4%)
# Score: 1065.5
#
#
#=======================================
BSNT_06248___ 1 ATGAAATATATTTTTTACGGATTAGGCATACTCATATTAAGTTTGGGCAT 50
.||||||||.|||||||.|.|.||||.||..|.||.||||...|.||.||
BL02694___yya 1 GTGAAATATCTTTTTTATGTAATAGGAATTTTAATCTTAACCCTTGGTAT 50
BSNT_06248___ 51 TTCCTTAACCATACAATCAGGACTGGGCACATCACCCTTCGATGCCCTTT 100
|.|.||.||.||.|||||||..||.|||.|.||.||.||.||.||.||||
BL02694___yya 51 TGCTTTCACGATTCAATCAGATCTCGGCGCTTCGCCTTTTGACGCACTTT 100
BSNT_06248___ 101 TGGTTGGT-CTGTC---AAAAGAAATC-GGTCTTACCGTAGGGAGCTGGG 145
||| |||| |||.| |.|.| | ||.|||||.||.||.||.||||
BL02694___yya 101 TGG-TGGTACTGGCCGTACATG----CGGGGCTTACTGTGGGAAGTTGGG 145
BSNT_06248___ 146 AGGTCCTTATTTCTGTGATCCTCTTAAT---CTGCAACGCTATATTAACG 192
|.|||.|.|||.||.|| ||.||||| ||||||..|..|.||||..
BL02694___yya 146 AAGTCATCATTGCTCTG---CTATTAATAGGCTGCAATTCGGTTTTAAAA 192
BSNT_06248___ 193 AGAAAAAAACC--TATTTTGCTAGGCT--TAATTACAGCATTCATTACTG 238
|||.|||.||| .|.||| |..|||| || |||||.||.||.||.|
BL02694___yya 193 AGACAAAGACCGGAAGTTT-CGGGGCTGCTA---ACAGCGTTTATAACCG 238
BSNT_06248___ 239 GAATAGGCATTGACCTATGG------TTG------TTTGTTGTAA----A 272
|.||.|||||||||.|.||| ||| |||.||||.| |
BL02694___yya 239 GTATCGGCATTGACATGTGGCTTTTTTTGCTGCATTTTTTTGTGACACCA 288
BSNT_06248___ 273 AAACACCCTCTATCTAAACGCGTTGTTA-AGCAAACTGCTTTGTTTCGGA 321
.|||| .||.|| ||||||..|.|||||||.||.
BL02694___yya 289 GAACA-----------------ATGGTACAGCAAAGCGGTTTGTTTTGGG 321
BSNT_06248___ 322 ATTGGTTTGGTGCTCATCGGTCTTGGAACAGCCATCTATCTT-CAGACGA 370
||.||.|||||..|.|..||..|.|||||.||.|..|| ||| .|.||.|
BL02694___yya 322 ATCGGCTTGGTTGTTACAGGATTAGGAACCGCGACATA-CTTATACACAA 370
BSNT_06248___ 371 AATTCGCATCAACGCCCATCGATCATTTAACACTTATTATCCGAGATCTC 420
|.||.||.||.|.|||.||.||.|.|.|||||.|.||.||
BL02694___yya 371 ATTTTGCTTCGATGCCAATTGACCGTCTAACATTCATCAT---------- 410
BSNT_06248___ 421 TCCAAAAGAA-----------CA--ATCTTGTTTTCAAGAA----CATTG 453
||||||| || ||.||.|||||.|||| ||||
BL02694___yya 411 ---AAAAGAATTAACAGGAACCAATATATTTTTTTCGAGAACCATCATT- 456
BSNT_06248___ 454 GTATATGCTCTTTTCTTAGTATTAGCAATTGTC---TTTAGAGGTCCTAT 500
|| .|||.||||..|...|||....||| ||.|.|||.||.||
BL02694___yya 457 ---TA---CCTTGTCTTCTTGACAGCGGCCGTCATGTTAAAAGGACCGAT 500
BSNT_06248___ 501 CGGCATTGGAACCCTTTTAACCGTCTGTTTAGGAGGAATGATCCTTCACG 550
.|||||.|||||..|.||||||||.|||||||||||..||..||||||..
BL02694___yya 501 TGGCATCGGAACTTTATTAACCGTTTGTTTAGGAGGGCTGGCCCTTCATT 550
BSNT_06248___ 551 TTTTTATGCCTATTG-TGGAA-------------------AGACACCTCT 580
|.||||||||..||| ||||| |||| .|||.
BL02694___yya 551 TGTTTATGCCGTTTGCTGGAAAAGTGTTGGGTCGCTTTACAGAC-GCTCG 599
BSNT_06248___ 581 TATCAAAAAAAAGAAGGGGTTAA 603
|| ||..|
BL02694___yya 600 TA-CATGA--------------- 606
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.