Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00348 and BL02704

See Amino acid alignment / Visit BSNT_00348 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:00
# Commandline: needle
#    -asequence dna-align/BSNT_00348___glmS.1.5803.seq
#    -bsequence dna-align/BL02704___glmS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00348___glmS-BL02704___glmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00348___glmS-BL02704___glmS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00348___glmS
# 2: BL02704___glmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1810
# Identity:    1452/1810 (80.2%)
# Similarity:  1452/1810 (80.2%)
# Gaps:          14/1810 ( 0.8%)
# Score: 5839.0
# 
#
#=======================================

BSNT_00348___      1 ATGTGTGGAATCGTAGGTTATATCGGTCAGCTTGATGCGAAGGAAATTTT     50
                     ||||||||.||.|||||||||||.||.|||||||||||.|||||||||||
BL02704___glm      1 ATGTGTGGTATTGTAGGTTATATTGGCCAGCTTGATGCAAAGGAAATTTT     50

BSNT_00348___     51 ATTAAAAGGGTTAGAGAAGCTTGAGTATCGCGGTTATGACTCTGCTGGTA    100
                     |.|.|||||.||.||||||||.|||||||||||.||.||.||.|||||.|
BL02704___glm     51 ACTTAAAGGTTTGGAGAAGCTGGAGTATCGCGGCTACGATTCAGCTGGAA    100

BSNT_00348___    101 TTGCTGTTGCCAACGAACAGGGAATCCATGTGTTCAAAGAAAAAGGACGC    150
                     |.|||||.||.||||||.|.||..|.||.|||||.||||||||||||||.
BL02704___glm    101 TCGCTGTAGCGAACGAAGACGGCGTACACGTGTTTAAAGAAAAAGGACGG    150

BSNT_00348___    151 ATTGCAGATCTTCGTGAAGTTGTGGATGCCAATGTAGAGGCGAAAGCCGG    200
                     ||.||.||||||||.|.||..||.|||||.||.||..||.|..||||.||
BL02704___glm    151 ATCGCCGATCTTCGCGCAGCCGTTGATGCAAACGTGAAGTCACAAGCGGG    200

BSNT_00348___    201 AATTGGGCATACTCGCTGGGCTACACACGGCGAACCAAGCTATCTGAACG    250
                     |||.||.||.||.||||||||.||.|||||.|||||.|||..|||.||||
BL02704___glm    201 AATCGGACACACGCGCTGGGCGACTCACGGAGAACCGAGCCGTCTAAACG    250

BSNT_00348___    251 CTCACCCGCATCAAAGCGCACTGGGCCGCTTTACACTTGTTCATAACGGC    300
                     ||||.|||||||||||||||...|||||.|||||||||||||||||||||
BL02704___glm    251 CTCATCCGCATCAAAGCGCATCAGGCCGTTTTACACTTGTTCATAACGGC    300

BSNT_00348___    301 GTGATCGAGAACTATGTTCAGCTGAAGCAAGAGTATTTGCAAGATGTAGA    350
                     ||.|||||.|||||||||||.||||.||..||.|||||.||.||||||..
BL02704___glm    301 GTCATCGAAAACTATGTTCAACTGACGCGCGAATATTTACACGATGTAAC    350

BSNT_00348___    351 GCTTAAAAGTGACACCGATACAGAAGTAGTCGTTCAAGTAATCGAGCAAT    400
                     .||||||||.||.||.||||||||.||.|||||||||||.||||||||||
BL02704___glm    351 CCTTAAAAGCGATACGGATACAGAGGTTGTCGTTCAAGTGATCGAGCAAT    400

BSNT_00348___    401 TCGTCAATGGAGGACTTGAGACAGAAGAAGCGTTCCGTAAAACACTTACA    450
                     ||||||||...||.|||||.|||||||||||||||||..||||.||.|..
BL02704___glm    401 TCGTCAATAACGGCCTTGACACAGAAGAAGCGTTCCGCCAAACGCTCATG    450

BSNT_00348___    451 CTGTTAAAAGGCTCTTATGCAATTGCTTTATTCGATAACGACAACAGAGA    500
                     |||.|.||||||||||||||.|||||.|||||||||.|.||.||||.|||
BL02704___glm    451 CTGCTCAAAGGCTCTTATGCGATTGCATTATTCGATCATGAAAACAAAGA    500

BSNT_00348___    501 AACGATTTTTGTAGCGAAAAACAAAAGCCCTCTATTAGTAGGTCTTGGAG    550
                     |||.||.|.|||.||||||||.||||||||.||..|.||.||.|||||||
BL02704___glm    501 AACAATCTATGTTGCGAAAAATAAAAGCCCGCTTCTTGTCGGCCTTGGAG    550

BSNT_00348___    551 ATACATTCAACGTCGTAGCATCTGATGCAATGGCGATGCTTCAAGTAACC    600
                     |.|..|||||.||.||.||.||||||||.|||||||||||||||||.||.
BL02704___glm    551 ACAATTTCAATGTTGTCGCGTCTGATGCGATGGCGATGCTTCAAGTGACA    600

BSNT_00348___    601 AACGAATATGTTGAGCTGATGGATAAAGAAATGGTTATCGTCACTGATGA    650
                     ||||||||.||.|||||.|||||||||||||||||.||.|||||.||..|
BL02704___glm    601 AACGAATACGTGGAGCTTATGGATAAAGAAATGGTGATTGTCACAGACAA    650

BSNT_00348___    651 CCAAGTTGTCATCAAAAACCTTGATGGTGACGTGATTACACGTGCGTCTT    700
                     ..||||.||.|||||||||||.||.||.||..||||..|||||||.||.|
BL02704___glm    651 AAAAGTCGTGATCAAAAACCTCGACGGAGAATTGATGTCACGTGCCTCAT    700

BSNT_00348___    701 ATATTGCTGAGCTTGATGCCAGTGATATCGAAAAAGGCACGTACCCTCAC    750
                     |||||||.|||||||||||.||.|||||||||||||||||.|||||||||
BL02704___glm    701 ATATTGCAGAGCTTGATGCGAGCGATATCGAAAAAGGCACATACCCTCAC    750

BSNT_00348___    751 TACATGTTGAAAGAAACGGATGAGCAGCCTGTTGTTATGCGCAAAATCAT    800
                     ||||||||.|||||||..|||||.|||||..||||.|||||.||||||||
BL02704___glm    751 TACATGTTAAAAGAAATCGATGAACAGCCGCTTGTCATGCGGAAAATCAT    800

BSNT_00348___    801 CCAAACGTATCAAGATGAAAACGGCAAGCTGTCTGTGCCTGGTGATATCG    850
                     .||.|||||.||||||||||||||||||||.||..|.|||||.||.||..
BL02704___glm    801 TCAGACGTACCAAGATGAAAACGGCAAGCTCTCCATTCCTGGAGACATTT    850

BSNT_00348___    851 CTGCCGCTGTAGCGGAAGCGGACCGCATCTATATCATTGGCTGCGGAACA    900
                     |...||||||.||.|||||.||||||.||||||||||||.|||||||||.
BL02704___glm    851 CAAACGCTGTTGCTGAAGCCGACCGCGTCTATATCATTGCCTGCGGAACT    900

BSNT_00348___    901 AGCTACCATGCAGGACTTGTCGGTAAACAATATATTGAAATGTGGGCAAA    950
                     ||||||||||||||.||||||||.||.||||.||||||||..|||||.||
BL02704___glm    901 AGCTACCATGCAGGTCTTGTCGGCAAGCAATTTATTGAAACATGGGCGAA    950

BSNT_00348___    951 CGTGCCGGTTGAAGTGCATGTAGCGAGTGAATTCTCCTACAACATGCCGC   1000
                     .||.||||.||||||.|||||.||.||.||||||||.|||||.|||||..
BL02704___glm    951 AGTTCCGGCTGAAGTCCATGTCGCAAGCGAATTCTCTTACAATATGCCAT   1000

BSNT_00348___   1001 TTCTGTCTAAGAAACCGCTCTTCATTTTCCTTTCTCAAAGCGGAGAAACA   1050
                     |.||.|||.||||.|||||.||.||.||..|||||||||||||||||||.
BL02704___glm   1001 TGCTTTCTGAGAAGCCGCTGTTTATCTTTATTTCTCAAAGCGGAGAAACG   1050

BSNT_00348___   1051 GCAGACAGCCGCGCGGTTCTCGTTCAAGTCAAAGCGCTCGGACACAAAGC   1100
                     ||.||||||||||||||||||||.||.||.|||..|||||||||||||||
BL02704___glm   1051 GCTGACAGCCGCGCGGTTCTCGTACAGGTGAAAAAGCTCGGACACAAAGC   1100

BSNT_00348___   1101 CCTGACAATCACAAACGTACCTGGATCAACGCTTTCTCGTGAAGCTGACT   1150
                     .||||||.|.||.||||||||.|||||.||||||||.||||||||.||||
BL02704___glm   1101 GCTGACATTGACCAACGTACCGGGATCCACGCTTTCCCGTGAAGCGGACT   1150

BSNT_00348___   1151 ATACATTGCTGCTTCATGCAGGCCCTGAGATCGCTGTTGCGTCAACAAAA   1200
                     ||||..|..|.||..||||.||||||||.|||||.||.||||||||||||
BL02704___glm   1151 ATACGCTTTTACTGAATGCCGGCCCTGAAATCGCGGTAGCGTCAACAAAA   1200

BSNT_00348___   1201 GCATACACTGCACAAATTGCAGTTCTTGCGGTTCTTGCTTCTGTGGCTGC   1250
                     |||||.||.||.|||||.||.|||||.||..||.|.||..|.|||.||||
BL02704___glm   1201 GCATATACGGCGCAAATCGCCGTTCTCGCAATTTTGGCAGCCGTGACTGC   1250

BSNT_00348___   1251 TGACAAAAA----CGGCATCGATATCGGATTTGACCTCGTCAAAGAACTC   1296
                     .|    |||    |||||..||..||||.|||||.||.||||||||.|||
BL02704___glm   1251 GG----AAAGCCGCGGCAAAGAACTCGGCTTTGATCTTGTCAAAGAGCTC   1296

BSNT_00348___   1297 G---CTATCGCTGCAAACGCAATGGAAGCTCTATGCGACCAGAAAGACGA   1343
                     |   .||||   |.||||||.||||||||.||.||||||||.||||||||
BL02704___glm   1297 GGCATTATC---GGAAACGCGATGGAAGCCCTTTGCGACCAAAAAGACGA   1343

BSNT_00348___   1344 AATGGAAATGATCGCCCGTGAATACCTGACTGTATCCAGAAACGCTTTCT   1393
                     |||||||||||||||||||||||||.||||.|||.|..|.||.||.||.|
BL02704___glm   1344 AATGGAAATGATCGCCCGTGAATACTTGACCGTAACACGCAATGCATTTT   1393

BSNT_00348___   1394 TCATCGGACGTGGCCTTGACTACTTCGTATGTGTCGAAGGCGCACTGAAG   1443
                     |||||||.||.|||||.|||||.|||||.||..|||||||..|.||||||
BL02704___glm   1394 TCATCGGCCGCGGCCTCGACTATTTCGTCTGCCTCGAAGGATCCCTGAAG   1443

BSNT_00348___   1444 CTGAAAGAGATTTCTTACATCCAGGCAGAAGGTTTTGCCGGCGGTGAGCT   1493
                     ||||||||||||||||||||.||.||.|||||.||.||||||||.||..|
BL02704___glm   1444 CTGAAAGAGATTTCTTACATTCAAGCTGAAGGCTTCGCCGGCGGCGAATT   1493

BSNT_00348___   1494 AAAGCACGGAACGATTGCCTTGATCGAACAAGGAACACCAGTATTCGCAC   1543
                     .||||||||.|||||.||.|||||||||.|.||.|||||.||..||||.|
BL02704___glm   1494 GAAGCACGGTACGATCGCATTGATCGAAGACGGCACACCGGTCATCGCCC   1543

BSNT_00348___   1544 TGGCAACTCAAGAGCACGTAAACCTAAGCATCCGCGGAAACGTCAAAGAA   1593
                     |.||.||.||.||||||||.|||.||||||||||||||||||||||||||
BL02704___glm   1544 TTGCGACACAGGAGCACGTCAACTTAAGCATCCGCGGAAACGTCAAAGAA   1593

BSNT_00348___   1594 GTTGCCGCTCGCGGAGCAAACACATGCATCATCTCACTGAAAGGCCTAGA   1643
                     ||..|.||.|||||.||.|||.|.|||.|.|||||.|||||||||||.||
BL02704___glm   1594 GTGACAGCCCGCGGCGCCAACCCTTGCGTGATCTCCCTGAAAGGCCTGGA   1643

BSNT_00348___   1644 CGATGCGGATGACAGATTCGTACTGCCGGAAGTAAACCCAGCGCTTGCTC   1693
                     .||.||.||.|||.|.|||||.|||||.|||||..|.||.|.|||.||.|
BL02704___glm   1644 AGAAGCAGACGACCGCTTCGTCCTGCCTGAAGTGCATCCGGAGCTCGCAC   1693

BSNT_00348___   1694 CGTTGGTATCTGTTGTTCCATTGCAGCTGATCGCTTACTATGCTGCACTG   1743
                     ||.|.||.||.||..|.||..|||||||||||||.|||||.||.||.|||
BL02704___glm   1694 CGCTCGTCTCCGTCATCCCGCTGCAGCTGATCGCATACTACGCAGCGCTG   1743

BSNT_00348___   1744 CATCGCGGCTGTGATGTGGATAAACCTCGTAACCTTGCGAAGAGTGTTAC   1793
                     ||.|||||||||||.||.|||||.||.||.|||||.|||||||||||.||
BL02704___glm   1744 CACCGCGGCTGTGACGTTGATAAGCCACGGAACCTGGCGAAGAGTGTGAC   1793

BSNT_00348___   1794 TGTGGAGTAA   1803
                     .||||||||.
BL02704___glm   1794 GGTGGAGTAG   1803


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