Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03312 and BL02728
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_03312___ypqA.1.5803.seq
# -bsequence dna-align/BL02728___ypgA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03312___ypqA-BL02728___ypgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03312___ypqA-BL02728___ypgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03312___ypqA
# 2: BL02728___ypgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 459
# Identity: 273/459 (59.5%)
# Similarity: 273/459 (59.5%)
# Gaps: 78/459 (17.0%)
# Score: 647.0
#
#
#=======================================
BSNT_03312___ 1 TTGGAATTCTATGATGACAAAAAGAA--CGAACTGCAAAAGAAAGAAGAA 48
.||||.||..|.||..||.|.||..| ||..|.||||| ||.||.|||
BL02728___ypg 1 ATGGATTTTAAGGAAAACGACAATCACTCGCTCAGCAAA--AAGGACGAA 48
BSNT_03312___ 49 A-TCATAACGGAGGCAATCGACAC---TCTTTTTCAATCCTCAGCGTTCG 94
| ||| .||.||..|.|| || |.||||.||| |||..|.|||.
BL02728___ypg 49 ATTCA----AGAAGCTGTTGA-ACAGTTGTTTTACAA--CTCGCCTTTCC 91
BSNT_03312___ 95 GCAACCTTATAAACGGATTTCAGAACCTAAT-------CAACTCGAG-TT 136
.|.|..||.||||...|||.||.||.||.|| ||.||..|| .|
BL02728___ypg 92 ACGATATTTTAAATTCATTCCAAAAACTCATATCAGACCAGCTTCAGAAT 141
BSNT_03312___ 137 TAAAGGATGTGCA-GACGACCATACTTGTTAGAGAAAGAGATACTGG--- 182
|..|.|||.|.|| || ||| |.||||| .|||..|||
BL02728___ypg 142 TCCACGATTTCCATGA-----ATA----TCAGAGA---GGATGATGGGGC 179
BSNT_03312___ 183 GCTGTATATCGATATTACCATTCCGGCGACGTTTCGAGATGGCGAGATCG 232
|||.||..|||||||..||.||||.|...||||||.|.||||.||.||..
BL02728___ypg 180 GCTTTACGTCGATATCGCCGTTCCTGAATCGTTTCAAAATGGAGATATTA 229
BSNT_03312___ 233 TCGTTGATGTTAAATCGAGGTATCTCCATGTAACACTCCAAGAAAAACAG 282
|..||||.|..|||||..|||||||.|||.| |.||..| ||..||
BL02728___ypg 230 TGATTGAAGCGAAATCACGGTATCTTCATAT----CGCCTTG--AAGGAG 273
BSNT_03312___ 283 AAACACCAAAATGAGGC---------TACCTTTACAAGCATGACAAGAAC 323
||||| |.||.|.||| | |.|||||||||.||.|.|||||
BL02728___ypg 274 AAACA--AGAAAGCGGCGGTTCTTCAT-CATTTACAAGCCTGTCCAGAAC 320
BSNT_03312___ 324 GGTTCAGCTGCCTTATGAAGTTCGCCAAGAAGATATGGAAACGTCTTGGA 373
.||||.|||.||.||....||.||..|||||...|||.|.|||||.||||
BL02728___ypg 321 CGTTCTGCTCCCATACCCTGTCCGTGAAGAAACAATGAAGACGTCGTGGA 370
BSNT_03312___ 374 A-CGAGCAGACAATGACACT-----TTTC--TTTC----CAAAAAATAAG 411
| ||| ||||.| || |.|| |||| |||||| |||
BL02728___ypg 371 ACCGA------AATGTC-CTCACGGTCTCATTTTCGGAGCAAAAA--AAG 411
BSNT_03312___ 412 CATGAATGA 420
|||||||||
BL02728___ypg 412 CATGAATGA 420
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