Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03323 and BL02731

See Amino acid alignment / Visit BSNT_03323 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_03323___recU.1.5803.seq
#    -bsequence dna-align/BL02731___recU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03323___recU-BL02731___recU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03323___recU-BL02731___recU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03323___recU
# 2: BL02731___recU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 631
# Identity:     473/631 (75.0%)
# Similarity:   473/631 (75.0%)
# Gaps:          44/631 ( 7.0%)
# Score: 1776.5
# 
#
#=======================================

BSNT_03323___      1 GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCG-AAACATTCGGTTT     49
                     ||||||||.||.||.|||||.|||.|.|.||||||| ||||| .|.|..|
BL02731___rec      1 GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACA-GCTGCCT     49

BSNT_03323___     50 CATCC---CAAAACAGTCAGAAAAGGGCC-CCGTCTTACAGTAATCGCGG     95
                     |||||   ||||      ||||    ||| .|||.||.|   ||||||||
BL02731___rec     50 CATCCTTGCAAA------AGAA----GCCGTCGTATTCC---AATCGCGG     86

BSNT_03323___     96 AATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAA    145
                     .||||||||||||||||||.|.||.||||||||||.|||||||    |||
BL02731___rec     87 CATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTAT----CAA    132

BSNT_03323___    146 ACCAA----ATTGCCGTTATACACAAAAAGCCGACACCTGTTCAAATTGT    191
                     .|..|    |||||.||.||.||.|||||.|||||||||||.||.|||||
BL02731___rec    133 TCTCATTCGATTGCGGTCATCCATAAAAAACCGACACCTGTACAGATTGT    182

BSNT_03323___    192 AAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTACT    241
                     ..|.|||.|||||||.||..||||.||.||.||.||.||||||||.||.|
BL02731___rec    183 CCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATT    232

BSNT_03323___    242 TTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTAT    291
                     |.||.||.||.||.||.||.||.||.||||||.||||.|||||.||.||.
BL02731___rec    233 TCAAGCAGTCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTAC    282

BSNT_03323___    292 ATTGATTTTGAGGCGAAAGAAACGAAAAACAAGACCTCTTTCCCCCTGCA    341
                     ||.||||||||.|||||||||||.||.|.|...|||||.|||||.||.||
BL02731___rec    283 ATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTCGTTCCCGCTTCA    332

BSNT_03323___    342 GAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAG    391
                     ||||||.||.||.|||||.||||||||||||||||||||...|||.||||
BL02731___rec    333 GAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAG    382

BSNT_03323___    392 ACGGTATTTGTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTG    441
                     ||||.||||||||||||||.|||||||||||.||..|..|.|||||||||
BL02731___rec    383 ACGGCATTTGTTTTGTTATCATATCCGCTTTTGAAGAAATTTATTTTTTG    432

BSNT_03323___    442 GAAGCCGATAAGCTGTTTTATTTCTGGGA-CAGAAAAGAAAAAAACGGCA    490
                     |||||.||.||..|.|||||||||||||| |.||||| |..|||||||||
BL02731___rec    433 GAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAA-AGCAAAACGGCA    481

BSNT_03323___    491 GAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTT    540
                     |||||||.||.||||||||.|||.|..|.|||.|.|||.|.||.||||..
BL02731___rec    482 GAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCA    531

BSNT_03323___    541 CTTGGATACGCACCCAGAATTGATTATATTAGTATTATTGAACAGCTTTA    590
                     |||||||||.|.||.||||||||||||||||..||||||||.|||.|.||
BL02731___rec    532 CTTGGATACTCGCCAAGAATTGATTATATTAAGATTATTGATCAGTTGTA    581

BSNT_03323___    591 TTTTTCGCCATCATCTGGTGCGAAAGGTTGA    621
                     ||||||||||||||        ||       
BL02731___rec    582 TTTTTCGCCATCAT--------AA-------    597


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