Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03328 and BL02742

See Amino acid alignment / Visit BSNT_03328 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_03328.1.5803.seq
#    -bsequence dna-align/BL02742.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03328-BL02742.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03328-BL02742.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03328
# 2: BL02742
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity:     299/540 (55.4%)
# Similarity:   299/540 (55.4%)
# Gaps:         156/540 (28.9%)
# Score: 880.5
# 
#
#=======================================

BSNT_03328         1 ----------------------------ATGAAGAAAACCTTGC------     16
                                                 |.||| |||||..|||      
BL02742            1 GTGACAAGCGTTTCACTGTTGGACGAATACGAA-AAAACGCTGCGGAAGA     49

BSNT_03328        17 --AGACC--AATCC-------------CGTGTATTT--------------     35
                       ||.||  |||||             || |||.||              
BL02742           50 AAAGGCCGGAATCCGGCGAAAGGCTTGCG-GTACTTTCTGAAAATCCGCT     98

BSNT_03328        36 ------TGATTTCT--------GCACGGA-ATTACAAGGCGATTTGCCAT     70
                           ||||||.|        ||| ||| |..||||        |||.|
BL02742           99 CTGCTATGATTTTTTTCAAGACGCA-GGAGAGGACAA--------GCCTT    139

BSNT_03328        71 GGGAGGACA-GCGGGA-AATACGTTCCGCTTTTATTTGAAGTGTGGGATG    118
                     |||||  || ||||.| |||..||.||||||.|.||||.||..|||||..
BL02742          140 GGGAG--CATGCGGAAGAATGGGTCCCGCTTCTGTTTGCAGAATGGGAAC    187

BSNT_03328       119 ACATCAAAGCATCACTTCTCCCAGTCTTTCAAACACGAAAATCGAGATGT    168
                     .||..||||.|...|||||.||.||||||.||||..|||||||.||.||.
BL02742          188 GCACAAAAGAAAAGCTTCTGCCCGTCTTTAAAACGAGAAAATCAAGGTGC    237

BSNT_03328       169 GACCAAAACGAAATGTTAAA--GGGCATTGTG-TGTTTGCT-----GGCT    210
                     ..|||..|.||.|||.|.||  |||   |||| ||.|||.|     |.||
BL02742          238 AGCCAGGATGACATGCTCAACGGGG---TGTGCTGCTTGATCGCAAGCCT    284

BSNT_03328       211 TCGTTACATTGGACAGCAGGTGAGCCGGTGAAATCGCTCGATTGGCAAGA    260
                     |     ||.|||||....||.|||||.||.|||...|||          |
BL02742          285 T-----CACTGGACGATGGGGGAGCCTGTCAAAAGTCTC----------A    319

BSNT_03328       261 ACTGAGGGAGAAATCATATCCC--------------GCAAAGCCGATTAA    296
                     |||  |||||  |||||..|||              |||||||||||.||
BL02742          320 ACT--GGGAG--ATCATCACCCGGAAGGATTTTGGAGCAAAGCCGATGAA    365

BSNT_03328       297 TTGGGCTGAACGAGTGGAATTTATTCTTCTTAAGCCGACCCAATACCATT    346
                     .|||.|.|||||..|.||.||.||.||.||.||.|||||.||.|||||||
BL02742          366 CTGGACGGAACGGCTCGAGTTCATCCTGCTGAAACCGACGCAGTACCATT    415

BSNT_03328       347 GCTTTATTCAGCTTGATGAGCTGATTACCGAAATGAAAAAGCATTTTTAT    396
                     |.|||||.||||||||.||..||.||||.||||||||||||||.||||||
BL02742          416 GTTTTATCCAGCTTGACGAATTGTTTACGGAAATGAAAAAGCAATTTTAT    465

BSNT_03328       397 AAATATCATGCGATGAATCGATAA----------------    420
                     ||||||..|||.||||||| ||||                
BL02742          466 AAATATGTTGCCATGAATC-ATAAAAAAGCCACTCACTAA    504


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