Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03335 and BL02747

See Amino acid alignment / Visit BSNT_03335 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_03335___ypmB.1.5803.seq
#    -bsequence dna-align/BL02747___ypmB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03335___ypmB-BL02747___ypmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03335___ypmB-BL02747___ypmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03335___ypmB
# 2: BL02747___ypmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 517
# Identity:     358/517 (69.2%)
# Similarity:   358/517 (69.2%)
# Gaps:          62/517 (12.0%)
# Score: 1124.0
# 
#
#=======================================

BSNT_03335___      1 ATGAGAAAAAAAGCATTAATATT--TACCGTCATTTTTGGTATTATTTTT     48
                     |||.|.||||||.|||||||.||  |||  |.||.|||||||||||.|||
BL02747___ypm      1 ATGGGCAAAAAAACATTAATTTTCATAC--TGATATTTGGTATTATCTTT     48

BSNT_03335___     49 TTAGCAGTACTTCTTGTCTCGGCAAGC--ATTTATA----AATCAGCCAT     92
                     |||.|||.||||||||   ||| .|||  ||.|.||    |  |.||.||
BL02747___ypm     49 TTAACAGCACTTCTTG---CGG-GAGCGAATGTCTACCGTA--CGGCAAT     92

BSNT_03335___     93 GGCACAAAAGGAAGAGGGGCACGAAGCAGCAGCTGCTGA---AGCTAAAA    139
                     ||..||.||.|||.|.||.|||| |||||  |||||.||   |||.|...
BL02747___ypm     93 GGATCAGAAAGAAAACGGCCACG-AGCAG--GCTGCCGAAACAGCCAGGC    139

BSNT_03335___    140 AAGAAACCGATCTCGC------CAATGTTGATCA-AGTCGAAACATTTGT    182
                     |.|||.|||     ||      ||| ||||| || .||.||.||.|||||
BL02747___ypm    140 AGGAAGCCG-----GCTTAAAACAA-GTTGA-CAGCGTGGAGACGTTTGT    182

BSNT_03335___    183 CGGAAAAGAAAAATATTATGTTG-TAAAGGGAACGGATAAAAAAGGC---    228
                     |||.||||||||..|.||..||| ||.|||| .|.||.|||||||||   
BL02747___ypm    183 CGGTAAAGAAAAGCAGTACATTGTTACAGGG-GCAGACAAAAAAGGCGAC    231

BSNT_03335___    229 --ACTGCGTTATATGTCTGGGTTCCTGCTGATAAAAAAGCA-AAAATTCT    275
                       |.||     |||||.|||||.|||||||| .|||||||| ||||..||
BL02747___ypm    232 AAAATG-----TATGTTTGGGTGCCTGCTGA-CAAAAAGCAGAAAACGCT    275

BSNT_03335___    276 CT-CAAAAGAAGCGAAAGAGGGAATCTCTGAAGACAAAGCGGCGAAAA--    322
                     .| ||||| ||||...||..||.||..|.|....|.|.||.|| ||||  
BL02747___ypm    276 TTACAAAA-AAGCATCAGCCGGCATTACCGGCCGCCAGGCTGC-AAAAGC    323

BSNT_03335___    323 ---TCATAAAGGATGAAGGGCTGGTTTCAAAGCAAAAAGAGGTTCATCTG    369
                        ||    |||||||.||.|||.|.||..|||..||||||||.||.||.
BL02747___ypm    324 TGTTC----AGGATGAGGGCCTGATGTCTGAGCTTAAAGAGGTGCACCTT    369

BSNT_03335___    370 GCAAGAGAAGGAAACGTCCTGCTTTGGGAAGTGACGTACTTAGACAAAGA    419
                     |||||.|||||.||.||.||..|.||||||||.||.||||||.|.|||||
BL02747___ypm    370 GCAAGGGAAGGCAATGTTCTATTGTGGGAAGTTACATACTTAAATAAAGA    419

BSNT_03335___    420 AGGGCAATACAGTTTAAGTTATGTGGACTTTACAACTGGAAAGATTCTCA    469
                     .|||||.|||||||||||.|||||||||||||.||..|||||.||||.||
BL02747___ypm    420 TGGGCAGTACAGTTTAAGCTATGTGGACTTTATAAACGGAAAAATTCACA    469

BSNT_03335___    470 AAAATATCACGCCTTAA    486
                     |||||||.||||||||.
BL02747___ypm    470 AAAATATTACGCCTTAG    486


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