Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03378 and BL02780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:17
# Commandline: needle
# -asequence dna-align/BSNT_03378___cheR.1.5803.seq
# -bsequence dna-align/BL02780___cheR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03378___cheR-BL02780___cheR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03378___cheR-BL02780___cheR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03378___cheR
# 2: BL02780___cheR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 817
# Identity: 568/817 (69.5%)
# Similarity: 568/817 (69.5%)
# Gaps: 95/817 (11.6%)
# Score: 1853.5
#
#
#=======================================
BSNT_03378___ 1 ATGGATACATACAGCGTATTTACAACG-----AAATGGAAACAATTAACC 45
|||||.|..|||||..|.||| | |||||||||.||.|.||.
BL02780___che 1 ATGGACAATTACAGTTTCTTT-----GTTGATAAATGGAAAAAAATGACT 45
BSNT_03378___ 46 GGAGTCGATTTAACACTATATAAAGAAGCACAAATGAAGAGAAGGCTAAC 95
||.||.|||||..||.|.||.|||||.||.||||||||.|||||.||.||
BL02780___che 46 GGTGTGGATTTGGCATTGTACAAAGAGGCGCAAATGAAAAGAAGACTGAC 95
BSNT_03378___ 96 GTCACTTTATGAGAAAAAGGGGTTC--CAAAGCTTTAAG-GACTTTGCTG 142
|||.||.|||||||||||.||.|.| | |.|||..| ||.||||| |
BL02780___che 96 GTCTCTATATGAGAAAAAAGGATACGGC---GATTTCCGCGAGTTTGC-G 141
BSNT_03378___ 143 C-GGCATTGGAAAAGGAACAAGCTCTCTTAAATGAAACATTGGACAGAAT 191
| .||.||.||||||.|..|||||||..|..|.|||||||||||||||||
BL02780___che 142 CTCGCTTTAGAAAAGAATGAAGCTCTTCTGCAGGAAACATTGGACAGAAT 191
BSNT_03378___ 192 GACGATCAATGTTTCAGAATTTTATCGTAATTATAAAAGATGGGAAGTTC 241
|||.||||||||||||||||||||..|.||.|||||.||.|||||.||||
BL02780___che 192 GACAATCAATGTTTCAGAATTTTACAGAAACTATAAGAGGTGGGAGGTTC 241
BSNT_03378___ 242 TTGAGACTGCAATTCTGCCGTTAATCAAGACCTCTAGGC-----CTTTAA 286
|.||.|...|.||.||||||.|..|.||| ||| || |..|.|
BL02780___che 242 TCGAAAAAACGATCCTGCCGCTTTTAAAG-CCT----GCGAAAACGCTGA 286
BSNT_03378___ 287 AAATTTGGAGTGCCGCCTGCTCAACGGGGGAGGAGCCATACACGCTTGCC 336
||.|||||||.||.||.||.|||||.|||||.|||||.||.||..|..|.
BL02780___che 287 AAGTTTGGAGCGCGGCTTGTTCAACCGGGGAAGAGCCTTATACATTATCA 336
BSNT_03378___ 337 ATGCTTTTGGACCAG-CAAAAAGGTCTTCCGGGCTATCAGATTTTAGCGA 385
|||.|||| .|.||| ||.|||||.||..|.|.||||||||||.|.||.|
BL02780___che 337 ATGATTTT-AAGCAGACAGAAAGGCCTCACAGACTATCAGATTATCGCAA 385
BSNT_03378___ 386 CGGATATTGATGAAAAAG-CATTGGAAAAAGCGAAAAAAGGCGTTTATCA 434
|.|||||.|||||.|||| |.|| .|.|||||||||.|||||||.|||||
BL02780___che 386 CAGATATCGATGACAAAGTCCTT-CAGAAAGCGAAAGAAGGCGTATATCA 434
BSNT_03378___ 435 GGAGCGGTCTTTACAGGAAGTGCCGCTATCTGTGAAAGATCGTTATTTTA 484
|||..||||..|.||||||||||||..|....|||||||.|.||||||||
BL02780___che 435 GGAAAGGTCCCTGCAGGAAGTGCCGAAAGAGATGAAAGAACTTTATTTTA 484
BSNT_03378___ 485 CGCAAAACGCAAA----TAGAAGTTATGAAGTGAAA-ACGGAAATCA--A 527
|||||.|||.||| | ||| ||||.||| || ||.|||| |
BL02780___che 485 CGCAAGACGGAAACCGCT-----TTA--AAGTCAAAGAC-GAGATCAGGA 526
BSNT_03378___ 528 AAAGAATATTACA------TTCAAAAAGCACAATTTGCTGGCGGATCGTT 571
||| ||| ||| |||||||||||||.|||||.||||..|
BL02780___che 527 AAA-------ACATCCGCTTTC-AAAAGCACAATTTACTGGCTGATCCGT 568
BSNT_03378___ 572 ATGAACAAGACTTTGACTTAATCGTGTGCCGCAATGTATTTATTTATTTT 621
||||..||||.|||||..|.|||||.|||||||||||..|.|||||||||
BL02780___che 569 ATGAGAAAGATTTTGATATCATCGTATGCCGCAATGTGCTCATTTATTTT 618
BSNT_03378___ 622 AC--AGAAAGCGCGAAG-GAAGAGCTGT-ATTTAAAAAT-----GGCACA 662
|| ||.|||| ..||| |||||.||.| || ||.| |||
BL02780___che 619 ACGGAGGAAGC-AAAAGAGAAGATCTATCAT----AAGTTCAGCGGC--- 660
BSNT_03378___ 663 TAGCTTGAAGAAGAATGGAGTTCTTTTTGTCGGCAGCACCGAGCAAATCT 712
|||.|||||||.||.||..||.|.||||||||.|||||.||.||.||||
BL02780___che 661 -AGCCTGAAGAATAAGGGGATTTTGTTTGTCGGAAGCACGGAACAGATCT 709
BSNT_03378___ 713 TCAATCCCGAGAA-----GTTTGGCCTAGTC---CCAGCCGATACATTCT 754
|||||||.||.|| |||| || |.| |.|||||.||.|
BL02780___che 710 TCAATCCGGAAAAATACGGTTT-------TCAATCGA-CAGATACGTTTT 751
BSNT_03378___ 755 TTTATCAAAAAAGATAG 771
|.|||||||||||.|||
BL02780___che 752 TCTATCAAAAAAGTTAG 768
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