Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03380 and BL02781

See Amino acid alignment / Visit BSNT_03380 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:17
# Commandline: needle
#    -asequence dna-align/BSNT_03380___ndk.1.5803.seq
#    -bsequence dna-align/BL02781___ndk.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03380___ndk-BL02781___ndk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03380___ndk-BL02781___ndk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03380___ndk
# 2: BL02781___ndk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 465
# Identity:     333/465 (71.6%)
# Similarity:   333/465 (71.6%)
# Gaps:          36/465 ( 7.7%)
# Score: 1206.0
# 
#
#=======================================

BSNT_03380___      1 ATGGAAAAGACTTTTATCATGGTGAAACCAGACGGTGTCCAACGTCAGCT     50
                     ||||||||.||.|||.|.|||||.|||||.|||||.||.||.||||||||
BL02781___ndk      1 ATGGAAAAAACCTTTGTGATGGTAAAACCTGACGGCGTTCAGCGTCAGCT     50

BSNT_03380___     51 CATTGGGGACATTTTATCTAGATTCGAACGTAAGGGCTTACAATTAGCTG    100
                     .||.||.||.|||||.|..|||||||||||||||||||||||||||...|
BL02781___ndk     51 GATCGGCGAAATTTTGTTAAGATTCGAACGTAAGGGCTTACAATTAATCG    100

BSNT_03380___    101 GCGCCAAGTTAATGAGAGTGACTGAACAAATGGCTGAGAAACACTACGCC    150
                     |.||||||.|.||||..||..|.|||.|.|.|||.|...|.||.||....
BL02781___ndk    101 GAGCCAAGCTGATGAAGGTCTCAGAAGAGACGGCAGGCGAGCATTATAAA    150

BSNT_03380___    151 GAACATCAAGGAAAGCCTTTCTTCGGAGAGCTCGTTGAGTTTATTACTTC    200
                     ||||||.|.||.||.||.||.|||||.||.||.||.||.|||||||||||
BL02781___ndk    151 GAACATAACGGGAAACCGTTTTTCGGCGAACTTGTCGACTTTATTACTTC    200

BSNT_03380___    201 AGGACCAGTATTCGCAATGGTGTGGGAAGGCGAAAATGTCATTGAAGTGA    250
                     |||.||.||||||||.|||||.|||||||||||..|.|..||.|..||..
BL02781___ndk    201 AGGCCCGGTATTCGCCATGGTATGGGAAGGCGAGGACGCAATCGCGGTCG    250

BSNT_03380___    251 CGAGACAGCTGATCGGGAAAACAAACCCTAAAGAAGCTTTACCTGGTACG    300
                     |.|||||||||||||||||.||.||||||||.|||||..|.||.|||||.
BL02781___ndk    251 CCAGACAGCTGATCGGGAAGACGAACCCTAAGGAAGCGCTTCCAGGTACA    300

BSNT_03380___    301 ATTCGTGGGGATTATGGCATGTTTGTCGGAAAAAACATCATCCACGGCTC    350
                     ||.||.||.||.|..||||||||||||||||||||.|||||.|||||.||
BL02781___ndk    301 ATCCGCGGAGACTTCGGCATGTTTGTCGGAAAAAATATCATTCACGGTTC    350

BSNT_03380___    351 TGATTCTCTCGAAAGTGCAGAACGCGAGATTAACATTTTCTTTAA-----    395
                     .|||||||..||||||||||.||||||.||.|||.|.||.|||||     
BL02781___ndk    351 AGATTCTCCTGAAAGTGCAGCACGCGAAATCAACTTGTTTTTTAAAGAGG    400

BSNT_03380___    396 --GAA-----TGAAG------AATTAGTATCATATCAGCAGCTTATGGCA    432
                       |||     |||||      |||||  ||.| ||||             
BL02781___ndk    401 ACGAACTTGTTGAAGACGAGAAATTA--ATGA-ATCA-------------    434

BSNT_03380___    433 GGCTGGATCTATTAA    447
                       .|||||.||.|||
BL02781___ndk    435 --ATGGATTTACTAA    447


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