Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01675 and BL02829
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_01675___yheC.1.5803.seq
# -bsequence dna-align/BL02829___yheC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01675___yheC-BL02829___yheC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01675___yheC-BL02829___yheC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01675___yheC
# 2: BL02829___yheC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1184
# Identity: 718/1184 (60.6%)
# Similarity: 718/1184 (60.6%)
# Gaps: 190/1184 (16.0%)
# Score: 1985.0
#
#
#=======================================
BSNT_01675___ 1 ATGATAACACTCGGTTTTATGTCCTTATCCCGCCAGCATGAAGCGGATTA 50
|||||.||.||.||.||||||||..|.||.|.|...||||||...|..||
BL02829___yhe 1 ATGATCACGCTTGGATTTATGTCGCTGTCGCACGGACATGAAAAAGCCTA 50
BSNT_01675___ 51 TTCCGCAGAACTGGCCAAAAGAGCACCCGAATTCGGCATACGTTTCATCC 100
|.|||.|||||||||||||...||..|.||.|.|||.||.||.||.||||
BL02829___yhe 51 TGCCGAAGAACTGGCCAAAGTGGCTTCGGACTACGGAATCCGATTTATCC 100
BSNT_01675___ 101 GGTTTACACCATTTGATATTTTACCTGACACTTTGCGTGTCAAAGCATCG 150
||||.||.||..|.|||||||..||.|...|..|||.|||.||| |
BL02829___yhe 101 GGTTCACCCCCCTGGATATTTCCCCCGGTTCCCTGCTTGTGAAA-----G 145
BSNT_01675___ 151 GTCTATCATTCGGCCAG----CAGCACA-TGGAACGAAACTGAAATGGCG 195
|.||.||.||...||.| |||.||| |||||.||||.|||||..|..
BL02829___yhe 146 GGCTCTCCTTTCACCCGAAGTCAGGACAGTGGAATGAAATTGAAAGAGAA 195
BSNT_01675___ 196 ATTCCAGATTATATTTATGATCGCTGTTTTTACGGCAAGGATTCA-CATT 244
||.||.||.|..||.|||||.|||||.||||||||||..|| ||| ||.|
BL02829___yhe 196 ATCCCGGAATTGATCTATGACCGCTGCTTTTACGGCAGAGA-TCAGCAAT 244
BSNT_01675___ 245 CCCAAAAAGCAAAACCAATCGTTGAGTGGCTCAAAAAATATCCGAAAACG 294
|..|||||||||||||.||.||.||.|||||||||||.|||||.||||||
BL02829___yhe 245 CGAAAAAAGCAAAACCGATTGTCGAATGGCTCAAAAAGTATCCTAAAACG 294
BSNT_01675___ 295 GAATTTATCGGGCGGGGTCTTCCCGATAAGTGGACCGTCCTTCACGATTT 344
..||||.|.||.|..||.|||||.||.||.||| |||.|||
BL02829___yhe 295 ACATTTTTAGGACTTGGACTTCCTGACAAATGG----------ACGGTTT 334
BSNT_01675___ 345 GCAGCAGCACT-----------CTGTAATCAATCCCTATATTCCGGAAAC 383
.|| .||||.| |.||.|||||..||||..||||.|.|||
BL02829___yhe 335 ACA-AAGCATTGAAAGCCGATCCCGTCATCAAGTCCTACCTTCCTGCAAC 383
BSNT_01675___ 384 GATAAAGGT----GAGCCGCTACGAACAAATTCACTCCTTTTTATCC--- 426
||.|.| || ||||.| ||....|||||
BL02829___yhe 384 ---AACGATTGCAGA------------AAATGC---CCAGGATATCCTGC 415
BSNT_01675___ 427 -----------AAAGAAAAAGCCTGCATCCTTAAACCGGCATTCGGCGCG 465
|||||||||.|.||||||.|.||.||.||||.|||..|.
BL02829___yhe 416 GCAAGCTTGCAAAAGAAAAATCATGCATCTTGAAGCCTGCATCCGGATCA 465
BSNT_01675___ 466 GGAGGCAGAGGCGTGATTC-TATTGAAGCT---GGGCAAGAAAAACATCA 511
||||||.|.|||.|.|||| |.||| |||| || |||||||...|
BL02829___yhe 466 GGAGGCCGCGGCATCATTCATCTTG-AGCTTACGG----GAAAAACGGTA 510
BSNT_01675___ 512 CAG-----CTACTTATCACATCGGAAAGGATAAGCAGACAAAAACGTTTT 556
.|| |||| ||.|.||||||..|.||.|||...|||.|.||||
BL02829___yhe 511 AAGGCCGCCTAC----CAAACCGGAAAACACAAACAGCTGAAATCATTTT 556
BSNT_01675___ 557 CCAACCAGACTTCTTTTAAAACATGGTGCAAAAAAGTGCTTCAGCATCAA 606
|.||.|||.|.||.|||.||||.||||||.|||||||.||||||||.|..
BL02829___yhe 557 CGAAACAGGCCTCATTTGAAACGTGGTGCCAAAAAGTTCTTCAGCACCGC 606
BSNT_01675___ 607 TATTTGCTTCAGCCTTACTTAAACATTCAAGATAAGGAACAATACCCTTG 656
|||.||||.||..|.|.|.|..|.||||||||.|||||....|..|||||
BL02829___yhe 607 TATCTGCTGCAATCGTTCCTCGATATTCAAGACAAGGACGGTTTTCCTTG 656
BSNT_01675___ 657 TGATATTCGTCTGTTTATGGAAAAAAACGAAGC--AGGTGAATGGAATAC 704
||||||..|..||.|..|..|.||||||| || .||.||||||.|.||
BL02829___yhe 657 TGATATCAGATTGCTGCTACAGAAAAACG--GCTATGGCGAATGGGAAAC 704
BSNT_01675___ 705 AGTCGGAAAGGCAGTAAGACGCGGA--TACAAACACGGGCTGCTGGCCAA 752
||.|||.||..|.||||| ||||| ||..|.||.||.|||||.||.||
BL02829___yhe 705 AGCCGGTAAAACGGTAAG--GCGGAGCTATCAGCATGGACTGCTTGCAAA 752
BSNT_01675___ 753 TTTGTCAGGCGGATCTGATGCGCTGACATTTGACTCCTGG-TTTGAAGAT 801
..||.|.||.||.|||||.|||.|||..||||||..|||| ||| |
BL02829___yhe 753 CCTGGCCGGTGGCTCTGAGGCGGTGAGCTTTGACAGCTGGCTTT-----T 797
BSNT_01675___ 802 A----TACCGAAAAAACAGCAAGTGGTTTTACTAGATGATGTGTTTT--- 844
| |.||||||||.|..||.|..||..|.||.||||| |||
BL02829___yhe 798 ATCCGTGCCGAAAAAGCGCCAGGCCGTCCTTCTCGATGA-----TTTAGA 842
BSNT_01675___ 845 --CGATTACCCAATCGGTTCCGTATTATCTTGACGAGCGCT--------- 883
|.||..|.||..|.||||| |.|| |||||
BL02829___yhe 843 GACAATGGCGCAGGCCGTTCC-------CCTG----GCGCTTGAATCAAA 881
BSNT_01675___ 884 --ATGGACCGTTGTTTGAACTCGGTCTTGATATATGTCTTGCTAAGGACG 931
|.||.||.||.||.||.|||||.||||||||.||.||..|.||.||||
BL02829___yhe 882 TCACGGGCCATTATTCGAGCTCGGCCTTGATATCTGCCTGACAAAAGACG 931
BSNT_01675___ 932 GGAGAATTTGGATTTTAGATATCAATTCAAAACCGGGCAGGAAGTCA--- 978
|.|.|.|.|||.|..|.|||.||||.||||| |.|.||||..||
BL02829___yhe 932 GAAAAGTCTGGCTGCTGGATGTCAACTCAAA----GCCCGGAAAACACGC 977
BSNT_01675___ 979 ----ATCCTGCGTGTCTCTCCCGAGCAAAAAGAACAGC---TGTACACTT 1021
|||..|| .||||||.|| |||||| ..||| ||||.|...
BL02829___yhe 978 TTTTATCAAGC---ACTCTCCTGA--AAAAAG-GGAGCTTTTGTATAAAG 1021
BSNT_01675___ 1022 GTCCCCTAAAGCGCTGCCAATATCT----GTTTTCTGAGCAAAGCC---- 1063
||||..|..||..||||..|| ||| |..||| ||||
BL02829___yhe 1022 GTCCTTTGGAGTACTGCTCAT-TCTTAACGGCTTC-------AGCCGGCG 1063
BSNT_01675___ 1064 AGAAAGGAGTTCTTCCGCGTGAATCCTAA----- 1092
.||||||.|.| |.||| ||
BL02829___yhe 1064 CGAAAGGGGCT-------GAGAA----AAGATGA 1086
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