Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05945 and BL02832
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05945___yxkF.1.5803.seq
# -bsequence dna-align/BL02832___yxkF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05945___yxkF-BL02832___yxkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05945___yxkF-BL02832___yxkF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05945___yxkF
# 2: BL02832___yxkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1097
# Identity: 513/1097 (46.8%)
# Similarity: 513/1097 (46.8%)
# Gaps: 418/1097 (38.1%)
# Score: 906.0
#
#
#=======================================
BSNT_05945___ 1 AT------GAAAT------CGCTGCTGGCTATTTATCCCGGTTCGA---- 34
|| ||||| ||| |||| |||| ||
BL02832___yxk 1 ATGCTGGAGAAATTAAAGACGC---------TTTA---CGGT--GAACGG 36
BSNT_05945___ 35 ----TTGTGTCTGAGGAGCT-TTGCATAAGGGAAGGCTGTC--TATGTTT 77
|||..|||.|| ||| ||.||.| |.|.|.|| | ||||.||
BL02832___yxk 37 ATGGTTGGATCTAAG--GCTGTTTCAAA---GCACGATG-CATTATGGTT 80
BSNT_05945___ 78 TTTTGATGAGAGCAATCAGAGGTA--------TATCTCCATTCCGAAAAC 119
| |||.|.||.|.| |.||..|.||..|||||.
BL02832___yxk 81 T-----------CAAACCGACGAAGGCGAAACTTTCGGCGTTTTGAAAAG 119
BSNT_05945___ 120 AGAGATCA------GTGAAAAAGAAGTATTGGTGCTGCAATC-ATTTTTG 162
.|.|.||| |.|||||||| ||||| || |||
BL02832___yxk 120 CGCGGTCACCGACCGGGAAAAAGA---------GCTGC--TCTATT---- 154
BSNT_05945___ 163 ACGCCTGCGGATGAGGGCAATCAACTGTCTATGAA-------------AT 199
|||| ||...||| ||.|.|..||| |.
BL02832___yxk 155 --GCCT----ATTCCGGC------CTTTTTCAGAACCGCATCGTCCGCAG 192
BSNT_05945___ 200 CACCTGA-------GGA-AAACAAGTGG--------TTTTCGTTCCTTTT 233
||.|||| ||| |||.|| ||| ||| |||||
BL02832___yxk 193 CAGCTGACAAAGCGGGAGAAAGAA-TGGCACGAATATTT------CTTTT 235
BSNT_05945___ 234 TTCCAGAGGGGAATTGCCGGCGTACATAAA-----GAAACGGACGAGATT 278
|.|| ||||..|.|.|| ||| ||||| |||
BL02832___yxk 236 --------GCGA--TGCCCCCCTCCA-AAACCCGGGAAAC-------ATT 267
BSNT_05945___ 279 ----TG-TTCACTTTCATTTATTCGGCAAAAT---------------AGA 308
|| ||||....|||||.|| .||||| |||
BL02832___yxk 268 CAGCTGATTCAAGGCCATTTTTT---TAAAATGGAGCATGCCCCTGAAGA 314
BSNT_05945___ 309 AAGGAC-GTCCTTTACAGAAGCGGT--TCGCCATTTTT---GGCCGGTGT 352
|| ||| |.|..|||.||||||||| .||.|.||||| |.||.|
BL02832___yxk 315 AA-GACAGGCGATTAAAGAAGCGGTCAGCGGCTTTTTTAAAGACCCG--- 360
BSNT_05945___ 353 CTTTTGTGATTGTGTGGATT--------CATGAGGACAGAGGCGTGATTG 394
||| .||||.||| | ||||| ||.|||.||.|
BL02832___yxk 361 CTT-----GTTGTATGG--TACGACCGGCATGA------AGCCGTTATCG 397
BSNT_05945___ 395 TCGAGCAGGAAAGTGAAGCGGCG------GCGAAGAAGGGCGAACTGGAA 438
|| ||.||||.|....|..|| ||.||.|| .||.|||
BL02832___yxk 398 TC---CACGAAAATCCTTCACCGTTTCTCGCAAAAAA---AGAGCTG--- 438
BSNT_05945___ 439 TC---GCTCGCAAAAGTTCTTGA-AAGTGATTT-----CTACTTCAGTGT 479
|| |||.||..|.|..| ||| |||.||||| |.|||.|.||
BL02832___yxk 439 TCCGAGCTTGCGGATGCAC-TGACAAGCGATTTCATGGCAACTCCTGT-- 485
BSNT_05945___ 480 CCGTTTTTACGCCGGAAGATTTTACGAG---CCGGAT------GAGTG-- 518
||||||..||.|..||.||...|.|| .||||| .|| |
BL02832___yxk 486 --GTTTTTCAGCGGCCAGCTTCATCCAGTCAACGGATCGCTTCAAG-GCA 532
BSNT_05945___ 519 ---TCTGC---GAAAA----------CATTACACTCGTGAACAGGCGTAT 552
||.|| ||||| |||||||..|..||| |||
BL02832___yxk 533 AAATCCGCTTTGAAAAACAAATGTTTCATTACATGCTGGAA---GCG--- 576
BSNT_05945___ 553 TTCCTGTTTGCTGA-----AAAACGGC---------------TGCCTCAG 582
|.||| .|||||.| ||||||..
BL02832___yxk 577 ---------GGTGACATCGGAAACGTCGCCACGTTTTGCCAGTGCCTCCC 617
BSNT_05945___ 583 GT-----------GCAGAGTGTGACCTTTGAG-------ATGATCTTTCC 614
|| |||.| ||| .||| |||.|..|||.
BL02832___yxk 618 GTCTTTTTTGACGGCAAA-----ACC--GGAGCGGGTTCATGCTTCTTCA 660
BSNT_05945___ 615 TTTTCTATTATTAGAAACAGAAAAAGAAAAACTGGAAACGCTGCTCTCTG 664
||||| || ||||.| |.
BL02832___yxk 661 TTTTC----------------------------GG--ACGCCG-----TA 675
BSNT_05945___ 665 A-AGAAGCTGAGCTTTTATTTGGAAGTGAAGCTGAG------CTAAGGAA 707
| |||||| |||.| .|||..|.||| ||
BL02832___yxk 676 AGAGAAGC---GCTGT---------CTGATCCCGAGACATCCCT------ 707
BSNT_05945___ 708 GACCATTAAGCTGTTTATTGA-AAACAACTCAAACGTCACATTAACAGCG 756
||||||.||...||.|| ||| |..||||...||.|.|.|..|.|||||.
BL02832___yxk 708 GACCATCAAAACGTATA-TGAGATGCAACCTGAATGCCTCTCTTACAGCC 756
BSNT_05945___ 757 AAAAAGCTGCATCTGCATCGCAACAGCCTGCAATATCGGATTGATAAATT 806
|||....||..|.|.||.||.|||||||||||.||..|.|||||||||||
BL02832___yxk 757 AAACGTTTGTTTATCCACCGAAACAGCCTGCAGTACAGAATTGATAAATT 806
BSNT_05945___ 807 TATTGAGCGGTCAGGGATAGATATCAAA----TCGTACAA--AGGCGCGC 850
|||.||.|||.|.|..||.||.||||.| |.|.|.|| ||.|||
BL02832___yxk 807 TATCGAACGGACTGCAATTGACATCAGACAGTTTGAAGAAGCAGCCGC-- 854
BSNT_05945___ 851 TTCTTGCCTATTTTAT-CTGC--CTGCAAAATGAAAGTTCAGAATAA 894
||..|||||.|| .||| ||.| ||.||
BL02832___yxk 855 ----TGTTTATTTGATGATGCATCTCC----------TTTAG----- 882
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