Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01666 and BL02835
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_01666___yheG.1.5803.seq
# -bsequence dna-align/BL02835___yheG.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01666___yheG-BL02835___yheG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01666___yheG-BL02835___yheG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01666___yheG
# 2: BL02835___yheG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 413/690 (59.9%)
# Similarity: 413/690 (59.9%)
# Gaps: 138/690 (20.0%)
# Score: 1022.0
#
#
#=======================================
BSNT_01666___ 1 ATGAAAAT--CGCTTTATTAGGAGCCAGCGGCCGCGTCGGACAAGCCTTT 48
.||||.|| ||||| ||.||||..|..|||||.||||||||.||||||
BL02835___yhe 1 TTGAAGATTGCGCTT--TTTGGAGGTACAGGCCGTGTCGGACAGGCCTTT 48
BSNT_01666___ 49 TTAACACAA----GCTGCAGCAGAT--GAAAGATT-TGATATTTTCGCTC 91
|.||| |.||.||..||| |.|..||| .| ||..|||.|
BL02835___yhe 49 ----CTCAATTTTGTTGAAGAGGATGGGCACCATTCCG---TTAACGCAC 91
BSNT_01666___ 92 TGATC---AGATCTCAA--------CA-TGCTGATTT-TCCCCTTTCAAA 128
|..|| ||..|..|| || |.|.||||| |.|| |
BL02835___yhe 92 TTGTCCGGAGGACGGAAGGCGCCCGCATTCCGGATTTATGCC-------A 134
BSNT_01666___ 129 AGACAGAACCATCATGGGGAACGCCCG----CCGCTTAGAAGATGT-GA- 172
|| || ||| ||.||.||||||.| |.|| |.||.|| ||
BL02835___yhe 135 AG-CA----CAT-ATAGGAAACGCCAGGAACCGGC----ATGACGTCGAG 174
BSNT_01666___ 173 -----AAAAAATAATGGAGAATGCTGAAATCGTGATCAGCTGTCTAGGCA 217
||.||| |||.||| ||.|||||..||||||||.||..||
BL02835___yhe 175 TCTTTAATAAA------AGATTGC-GATATCGTTGTCAGCTGTTTAAACA 217
BSNT_01666___ 218 CAGATGGTGATGATACCTTGTCAACTG---CTATGGCACACATTCTCTCC 264
|||||||.||.|||||.||| ||.| |.||.|.||||||..|...|
BL02835___yhe 218 CAGATGGAGACGATACATTG---ACCGTCTCCATCGAACACATCATAAAC 264
BSNT_01666___ 265 GCTATGGAGGAACAGCATATCAAACGGCTTATTACGATCGGCACCGCAGG 314
||.|||.|.|.|||.|..|||||||||||.|||||.|||||.|||||.||
BL02835___yhe 265 GCCATGAACGTACATCGGATCAAACGGCTGATTACCATCGGAACCGCCGG 314
BSNT_01666___ 315 GATCCTAGATTCCCGATATGAACCGGGGAAA-----TACCGGTTTGAAAC 359
.||..||.|..|..|..| |||||.|| |||||.||||||||
BL02835___yhe 315 CATTTTAAACGCAAGGCA-GAACCCGG----CCCTTTACCGCTTTGAAAC 359
BSNT_01666___ 360 AAATGAATCGAAACGAAAGCAG----ACCCGCGCAGC-CAAGGAGCATGC 404
|||.|||||.||||| || | ||.|||||||| ||| ||.|||||
BL02835___yhe 360 AAACGAATCAAAACG---GC-GCTCTACGCGCGCAGCTCAA-GAACATGC 404
BSNT_01666___ 405 AAAAGTATACGAAATGCTTAAAGAATC--ATCATTAGACTGGACAATCAT 452
....||.||||||..|||....||||| ||| |.||.|||||.|||.|
BL02835___yhe 405 CCGTGTGTACGAACGGCTCCGCGAATCTGATC--TGGATTGGACGATCGT 452
BSNT_01666___ 453 CTGCCCCACTTACCTCCCGGACGGAACAGCAACCGGCGTTTA--TCGTAC 500
||||||.||.||.|||||.||.|| .|||||.||.| .|.|||
BL02835___yhe 453 CTGCCCGACGTATCTCCCCGATGG-------GCCGGCATTGAAGACATAC 495
BSNT_01666___ 501 GGAGCGT----AAC-----GTTTTGCCTGAGGGCGGCACAAGCATTTCGG 541
||| ||| |||.||||....|||||.|.|...||.||..
BL02835___yhe 496 ----CGTTTTGAACAGGATGTTCTGCCGCCCGGCGGAAGAGAAATATCCA 541
BSNT_01666___ 542 TCGGCGATACTGCGGA----CTTTTTATATCGTGAGCTCG----TTACAG 583
.||||||.||.||..| |||||||.| .||||.| |.||
BL02835___yhe 542 CCGGCGACACCGCCCATTTTCTTTTTACA----CAGCTAGAGTCTGAC-- 585
BSNT_01666___ 584 GTGAGTATGTC--GGATACCGTGTCGGACTGGCTTATTGA 621
.|||.|||| ||..| |.||.||.||.|||||||.|
BL02835___yhe 586 --CAGTTTGTCAAGGCGA--GGGTGGGGCTCGCTTATTAA 621
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