Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00992 and BL02839

See Amino acid alignment / Visit BSNT_00992 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:31
# Commandline: needle
#    -asequence dna-align/BSNT_00992___ydhH.1.5803.seq
#    -bsequence dna-align/BL02839___ydhH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00992___ydhH-BL02839___ydhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00992___ydhH-BL02839___ydhH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00992___ydhH
# 2: BL02839___ydhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 552
# Identity:     294/552 (53.3%)
# Similarity:   294/552 (53.3%)
# Gaps:         129/552 (23.4%)
# Score: 663.0
# 
#
#=======================================

BSNT_00992___      1 ATGTCCAGTCATTATA----AATAC------CCTCTCATTTTCACGGCAT     40
                               ||.|.|    |||||      ||..|..||||||..||.|
BL02839___ydh      1 ----------ATGAAACAGGAATACAAGCGGCCGGTGCTTTTCATCGCCT     40

BSNT_00992___     41 TCCTATTAATCGCTTTCTGCTTGATCTTTTTTTC---------CT-ATCA     80
                     .|||.||.||.||.||.|||  |...|||.||||         || ||| 
BL02839___ydh     41 CCCTTTTCATGGCCTTTTGC--GCCGTTTATTTCGGCGGGAGGCTGATC-     87

BSNT_00992___     81 CCTGATTCATCATGTTCGTTT-------GGAGTATCCGAATTGGCAGGGA    123
                                 .|||  |||       |||.||.||.||.|||.|.|| 
BL02839___ydh     88 ------------GGTT--TTTATATGGCGGAATACCCAAAATGGAACGG-    122

BSNT_00992___    124 GAAAGCAAAGATCAG-----AATTGGGAAGCTGTTTTCACAAAAAATGAA    168
                         ||||||..|.|     ||||||||.||.||..||| ||||.||  |
BL02839___ydh    123 ----GCAAAGCGCCGACGGAAATTGGGAGGCCGTGATCA-AAAAGAT--A    165

BSNT_00992___    169 GAT------GCACCGAATGAATACAGCGGCAAACTTTATTGGATCGGTGA    212
                     |||      ||.|.|      |.|.||||..|.||.||.||||..||.||
BL02839___ydh    166 GATGGCCGCGCGCTG------TTCGGCGGAGAGCTCTACTGGACAGGCGA    209

BSNT_00992___    213 ----TACAA-TTGAAACAGACAACACTTATTTGGAATCACTGATTGTAAA    257
                         ..||| .||     |||.|.||.|||||||||..|.||.|.|||||
BL02839___ydh    210 CCGCGGCAAGCTG-----GACGATACATATTTGGAAAAATTGGTCGTAAA    254

BSNT_00992___    258 AAAAGATGATGAA---GTTCTGCTGAGTTCTAACACGGAAATTCCAATGC    304
                     ....|.|||||||   |||.||         |||.|..||||...||.||
BL02839___ydh    255 GTTTGGTGATGAAATCGTTTTG---------AACGCCCAAATCGAAACGC    295

BSNT_00992___    305 --GT----GACTATTCCGGAGGCACTTTTTCTGATGGAAGCGCAAAAGAA    348
                       ||    ||.||..|.|||||||..||..|.|..|||.|..||||||||
BL02839___ydh    296 CGGTGAAAGATTACGCGGGAGGCAAATTCCCCGGCGGAGGGTCAAAAGAA    345

BSNT_00992___    349 AAGTCTGTTTCTTTTTTAGAGCGGTTAGATGAACATGAGCTTGAAGGCCA    398
                     .|.||.|||||||||||.||..||.|.||.|||..|||..|.|..||||.
BL02839___ydh    346 CAATCCGTTTCTTTTTTGGAAGGGCTTGAAGAAGCTGAAATCGCCGGCCG    395

BSNT_00992___    399 TGATATTACGATTGAAGTGAAATGGAAACAAGGTAATCATTATTCTACGA    448
                     .||..|.|||.||.||.||.|.||||.|.|.||.||.||  |...|.|.|
BL02839___ydh    396 CGAGGTGACGGTTCAATTGGATTGGAGAGAGGGCAAACA--AGCGTCCCA    443

BSNT_00992___    449 GTCAG--CTTACGCTCAATGAAAAGACCTTGTTTGATGAAAAGCAGCAAT    496
                     ..|||  .|||||||..|| |||||..|.||.|     ||          
BL02839___ydh    444 TACAGGATTTACGCTTGAT-AAAAGCTCATGGT-----AA----------    477

BSNT_00992___    497 AG    498
                       
BL02839___ydh    477 --    477


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