Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01642 and BL02846

See Amino acid alignment / Visit BSNT_01642 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01642.1.5803.seq
#    -bsequence dna-align/BL02846___cueR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01642-BL02846___cueR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01642-BL02846___cueR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01642
# 2: BL02846___cueR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity:     332/553 (60.0%)
# Similarity:   332/553 (60.0%)
# Gaps:         134/553 (24.2%)
# Score: 1230.0
# 
#
#=======================================

BSNT_01642         1 ATGTTACTTCAATCAGATGATGAATTCCACAACTTCCAATTCCGGTCTGA     50
                                                                       
BL02846___cue      0 --------------------------------------------------      0

BSNT_01642        51 AAAAAACAATAAACTTGTGCAAGACACCGTTCATATATTAAACTATTCTC    100
                                                                       
BL02846___cue      0 --------------------------------------------------      0

BSNT_01642       101 ATAACTATAACGTGATGGTTG-GGAGGGATATAGATGGGGCTGAGACTTA    149
                                       ||| ||||||||..|||||||||.||||..||
BL02846___cue      1 ------------------TTGAGGAGGGATGCAGATGGGGCAGAGAAATA     32

BSNT_01642       150 TCGCATCAGTGAACTAGCGGC-ACTCGCCGGAGTAACGAAACGGACAGTT    198
                     ||||||..|.|||.||||.|| .|| ||.||.|||||.||||||||.||.
BL02846___cue     33 TCGCATTGGCGAATTAGCAGCTGCT-GCAGGCGTAACAAAACGGACTGTC     81

BSNT_01642       199 GATTATTATACGAATCTCGGTCTGCTTACGCCGGCCAGATCCTGTTCAAA    248
                     ||||||||||||||||||||.|||.|.|||||.|.||||||.||||||||
BL02846___cue     82 GATTATTATACGAATCTCGGGCTGTTAACGCCTGACAGATCATGTTCAAA    131

BSNT_01642       249 TTACCGTTACTACGACGAAAATGCACTCAAACGACTTATATTTATTGTAG    298
                     .||||||||.|||||.|||...||.||||||||.||.|..||||||.|.|
BL02846___cue    132 CTACCGTTATTACGATGAAGCCGCTCTCAAACGGCTGAAGTTTATTATGG    181

BSNT_01642       299 ATTGCAAGAAGCAGCGATTGGCCCTGTCCGATATTAAAGATCGACTGGAG    348
                     |.||||||.|||||.||||||||||||||||.||||||||..|.|||||.
BL02846___cue    182 ACTGCAAGCAGCAGAGATTGGCCCTGTCCGACATTAAAGAAAGGCTGGAA    231

BSNT_01642       349 AACCAGTTTCCCTCTTCAGCT---AAACTTGATGATGAAATTGGAAATCT    395
                     ||||||||||||||||||.||   ||   |||||||||||||||||..||
BL02846___cue    232 AACCAGTTTCCCTCTTCAACTGTGAA---TGATGATGAAATTGGAAGCCT    278

BSNT_01642       396 GGCATTAGAAATTGATCATATGAATCAAAACATCTCCGGAATCTTGCATC    445
                     |.||...|||||.||||||.|.|||.|.||.|||||||..|||.| .|.|
BL02846___cue    279 GACAACGGAAATCGATCATGTCAATGACAATATCTCCGTGATCAT-AAAC    327

BSNT_01642       446 GGTTTG-AACGGCTGAAGCCCGAGGATCGTGACAAGCTGAAAAGCAAACT    494
                     .|.||| ||||||||||.|||||.||.||..|.|..|||||||||...||
BL02846___cue    328 AGATTGAAACGGCTGAATCCCGATGAACGGAAGATTCTGAAAAGCCGTCT    377

BSNT_01642       495 CCCGCCTGAAAAGCTCGCCGTGTTCCAATCATTTATGCTGCTG-TTAAGT    543
                     ..|.||||||||..|..|.||..||||.||||||.|||||||| ||.|| 
BL02846___cue    378 TTCTCCTGAAAAAATGACGGTCATCCAGTCATTTTTGCTGCTGCTTTAG-    426

BSNT_01642       544 TAA    546
                        
BL02846___cue    426 ---    426


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