Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01641 and BL02847

See Amino acid alignment / Visit BSNT_01641 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01641___yhdP.1.5803.seq
#    -bsequence dna-align/BL02847___yhdP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01641___yhdP-BL02847___yhdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01641___yhdP-BL02847___yhdP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01641___yhdP
# 2: BL02847___yhdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1378
# Identity:    1001/1378 (72.6%)
# Similarity:  1001/1378 (72.6%)
# Gaps:          98/1378 ( 7.1%)
# Score: 3648.5
# 
#
#=======================================

BSNT_01641___      1 TTGGACATAGTGAATTTGATTTTAGTTGCTGTTTTAATCGCCCTGACGGC     50
                     |||||.|||||.|||||||||||.||||||||.|||||.||..|.||.||
BL02847___yhd      1 TTGGAAATAGTTAATTTGATTTTTGTTGCTGTATTAATTGCTTTAACAGC     50

BSNT_01641___     51 ATTTTTCGTGGCATCTGAGTTTGCCATTATCAGAATCAGAGGCTCACGGA    100
                     |||||||||.||.|||||||||||.|||||||||||||||.||||.|||.
BL02847___yhd     51 ATTTTTCGTAGCGTCTGAGTTTGCGATTATCAGAATCAGAAGCTCGCGGG    100

BSNT_01641___    101 TCGATCAGCTGATCGCGGAAGGAAATAAAGCAGCAATAGCCGTAAAAAAA    150
                     |.||||||||.||.||.||||||||.|||.||||.||..|.||.||||||
BL02847___yhd    101 TTGATCAGCTCATTGCTGAAGGAAACAAAACAGCGATTTCGGTGAAAAAA    150

BSNT_01641___    151 GTGACCACGCATCTT-GATGAATATTTATCTGCGTGTCAGCTCGGAATTA    199
                     ||.|..||||| ||| ||.|||||||||||.||.||.||||||||.||.|
BL02847___yhd    151 GTCATTACGCA-CTTAGACGAATATTTATCGGCCTGCCAGCTCGGCATCA    199

BSNT_01641___    200 CATTGACTTCCATCGGATTAGG--GGTTTTAGGTGAATCAACGATCGAAA    247
                     |.|||||..|..||||..|.||  ||  .|.||.||..|.|||.|||...
BL02847___yhd    200 CTTTGACGGCTCTCGGTCTCGGATGG--CTCGGGGAGCCGACGGTCGCCC    247

BSNT_01641___    248 GGCTGCTTCACCCGCTTTTCGTCCAAAT-GAACGTTCCAGGTTCCCTTTC    296
                     ||||||||.|.|||||.||.|| .|||| ||.|.||||..|.||..|.||
BL02847___yhd    248 GGCTGCTTGAACCGCTATTTGT-TAAATGGAGCATTCCGAGCTCTGTATC    296

BSNT_01641___    297 ACATGTCATATCGTTT-ATTTTTGCGT-AT-GCCATT-------ATCACG    336
                     |     ||.||||||| |.|    ||| || ||| ||       ||.|||
BL02847___yhd    297 A-----CACATCGTTTCAGT----CGTGATCGCC-TTCAGCTTGATTACG    336

BSNT_01641___    337 TTCTTACACGTTGTTGTCGGAGAACTTGCACCTAAGACAGTCGCTATCCA    386
                     ||.||.||.||.||||||||.||.||.||.||.|||||..|.||.|||||
BL02847___yhd    337 TTTTTGCATGTGGTTGTCGGCGAGCTCGCTCCGAAGACGCTTGCGATCCA    386

BSNT_01641___    387 AAAGGCGGAAGCAGTGTCTATGCTGTTTGCGAAACCGCTGATTTGGTTTT    436
                     |||.||||||||.||.||..|.||.|||||.|||||..||||.|||||.|
BL02847___yhd    387 AAAAGCGGAAGCCGTTTCCTTTCTTTTTGCAAAACCTTTGATCTGGTTCT    436

BSNT_01641___    437 ACCGCATCGCGTTCCCATTCATTTGGCTTTTGAACAATTCCGCACGGTTA    486
                     |||||||...||||||||||||.|||....|||||...||.|||.||.|.
BL02847___yhd    437 ACCGCATTATGTTCCCATTCATCTGGGCGCTGAACGGATCAGCAAGGCTG    486

BSNT_01641___    487 TTGACCAAAGCATTTGGCCTGGAGACCGTTTCAGAAAACGAACTGGCTCA    536
                     |||||.|||||.||||||||.||..|.|||||.|||||.|||.||||.||
BL02847___yhd    487 TTGACGAAAGCGTTTGGCCTTGAAGCGGTTTCTGAAAATGAAATGGCGCA    536

BSNT_01641___    537 CTCAGAAGAAGAGCTGCGAATCATTTTGTCTGAAAGCTATAAAAGCGGTG    586
                     ||||||.||||||||||||||.|||.||||.|||||||||||||||||.|
BL02847___yhd    537 CTCAGAGGAAGAGCTGCGAATTATTCTGTCAGAAAGCTATAAAAGCGGCG    586

BSNT_01641___    587 AAATCAACCAATCAGAGTTTAAATATGTGAATAAAATCTTTGAATTTGAC    636
                     |||||||.|||||.|||||.||||||||.||.|||||.||||||||.||.
BL02847___yhd    587 AAATCAATCAATCTGAGTTCAAATATGTCAACAAAATTTTTGAATTCGAT    636

BSNT_01641___    637 GACAGGCTCGCGAAAGAAATTATGATTCCGCGGACCGAAATTGTCAGCCT    686
                     |||.|.||.||.||.|||||.|||||.|||.|.||.|||.|.|||||..|
BL02847___yhd    637 GACCGTCTTGCCAAGGAAATCATGATCCCGAGAACAGAAGTCGTCAGTTT    686

BSNT_01641___    687 TCCGCATGATATCAAGATTTCTGAAATGATGGACATCATTCAGATTGAAA    736
                     |||..|||||||.||.||..|.||.|||||.|||||||...||...|||.
BL02847___yhd    687 TCCAAATGATATGAAAATCGCCGAGATGATTGACATCACGAAGGCCGAAG    736

BSNT_01641___    737 AATATACCCGCTACCCTGTGGAAGAGGGCGATAAAGATAACATTATCGGG    786
                     ..|||||||||||.||.||.|||||.||.|||||.||.|||||..||||.
BL02847___yhd    737 GCTATACCCGCTATCCCGTCGAAGACGGTGATAAGGACAACATCGTCGGC    786

BSNT_01641___    787 GTTATTAACATTAAAGAAGTGCTGACAGCCTGCATAAGCGGTGAGGTAT-    835
                     ||.||.||..|.||.|||.|.|||||.||||||||.|||||.||   || 
BL02847___yhd    787 GTCATCAATGTCAAGGAAATACTGACGGCCTGCATCAGCGGAGA---ATG    833

BSNT_01641___    836 CT-----GTTGATTCCACCATTTCTCAATTCGTCAACCCGATCATTCATG    880
                     ||     |..||   |||.|||...||.||..||||.|||||||||||||
BL02847___yhd    834 CTCCAAAGAAGA---CACGATTGAACAGTTTATCAATCCGATCATTCATG    880

BSNT_01641___    881 TCATTGAATCTGCGCCGATCCAAGACCTGCTTGTCAAAATGCAAAAAGAG    930
                     |.||.|||.|.|..||||||||.||.||||||.|.||||||||.||||||
BL02847___yhd    881 TGATCGAAACCGTTCCGATCCACGATCTGCTTCTGAAAATGCAGAAAGAG    930

BSNT_01641___    931 AGGGTCCACATGGCCATTTTGTCTGATGAATACGGCGGTACTGCCGGGCT    980
                     .|.||.||.|||||.||..|.|||||||||||||||||.||.|||||.||
BL02847___yhd    931 CGCGTTCATATGGCGATCCTTTCTGATGAATACGGCGGAACGGCCGGACT    980

BSNT_01641___    981 TGTGACGGTTGAGGACATCATTGAGGAAATTGTCGGTGAAATCCGCGACG   1030
                     .||||||||.||.|||||||||||.|||||.|||||.|||||||||||||
BL02847___yhd    981 CGTGACGGTCGAAGACATCATTGAAGAAATCGTCGGCGAAATCCGCGACG   1030

BSNT_01641___   1031 AATTTGATATTGATGAAATTAGCGAAATCCGCAAAATCGGCGAAGGCCAT   1080
                     ||||.||||||||||||||||..|||||||||||||||||||||..|||.
BL02847___yhd   1031 AATTCGATATTGATGAAATTAATGAAATCCGCAAAATCGGCGAAAACCAC   1080

BSNT_01641___   1081 TATATTCTTGACGGAAAAGTGTTAATTGACCAAGTAAACGACCTGCTAGG   1130
                     ||.|||||.|||||.||||||.|..|..||||.||.|||||..||||.||
BL02847___yhd   1081 TACATTCTCGACGGCAAAGTGCTCGTCAACCAGGTCAACGATTTGCTCGG   1130

BSNT_01641___   1131 CATTCATTTAGAGAACGAAGAAGTCGACACAATCGGCGGCTGGTTCCTTA   1180
                     ||||||..|.||.||.||.||..|.|||||.||||||||.||||||||.|
BL02847___yhd   1131 CATTCAGCTCGACAATGAGGAGATTGACACGATCGGCGGATGGTTCCTGA   1180

BSNT_01641___   1181 CTCAAAAATACGATGTTGAAAAAG-----ATGATTCCATCATCGAAGAGG   1225
                     |.||||||||.||.||..||||||     |||     ||||.|||..|||
BL02847___yhd   1181 CGCAAAAATATGACGTCCAAAAAGGCGACATG-----ATCACCGAGCAGG   1225

BSNT_01641___   1226 GCTGCGAATTCATCATTAATGAAATTGACGGCCACCACGTGGCATATATT   1275
                     |.|..|||||||..||.||.|||||.|||||||||||.||..||||..||
BL02847___yhd   1226 GATTTGAATTCACGATCAACGAAATCGACGGCCACCATGTTTCATACGTT   1275

BSNT_01641___   1276 GAAGTGAAAAA------------------GCTTCAAGAAGAAGAACTTCT   1307
                     ||.||||||||                  ||||.||||||..|||     
BL02847___yhd   1276 GAGGTGAAAAAAGCTGCGGAAACGCCGCTGCTTGAAGAAGCGGAA-----   1320

BSNT_01641___   1308 GGAGACAGCTAACCAGCAGGAAGCATAA   1335
                              |||                
BL02847___yhd   1321 ---------TAA----------------   1323


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