Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01637 and BL02852

See Amino acid alignment / Visit BSNT_01637 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence dna-align/BSNT_01637___yhdL.1.5803.seq
#    -bsequence dna-align/BL02852___yhdL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01637___yhdL-BL02852___yhdL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01637___yhdL-BL02852___yhdL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01637___yhdL
# 2: BL02852___yhdL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1174
# Identity:     737/1174 (62.8%)
# Similarity:   737/1174 (62.8%)
# Gaps:         203/1174 (17.3%)
# Score: 2153.5
# 
#
#=======================================

BSNT_01637___      1 ATGAATGAAGAATTTAAAAAGCGTTTTGATCAATATAAAAATGGGGAAAT     50
                     |||||||||||.||||||||.||||..||..||||||||||.||.|||.|
BL02852___yhd      1 ATGAATGAAGATTTTAAAAAACGTTGGGAAAAATATAAAAACGGCGAACT     50

BSNT_01637___     51 GAGCGACCAGGAAATGACTGC-ATTTGAGGAAGAACTTGAGAAGCTCGAA     99
                     ...|||...||||||| ||.| ..|.||.|||||.|||||..||||.|||
BL02852___yhd     51 TTCCGAATCGGAAATG-CTCCGGGTCGAAGAAGAGCTTGAACAGCTTGAA     99

BSNT_01637___    100 GTATATCAGGAACTGATTG-ACAGCGAACTAGAGGACGATAACGATTGGG    148
                     |.|||.|||||..||.|.| |||| |||.|..|.||||   |.||.||||
BL02852___yhd    100 GAATACCAGGACATGCTGGAACAG-GAAATGAAAGACG---AAGACTGGG    145

BSNT_01637___    149 ATCTCAGC-ATCAGTCCTGAAAAACAAAAAGCGATTTTAGCCTACGGCAA    197
                     || |..|| ||||||||||||||.|||||||||||||||...|||||.||
BL02852___yhd    146 AT-TTGGCGATCAGTCCTGAAAAGCAAAAAGCGATTTTAAGATACGGAAA    194

BSNT_01637___    198 ACGCAAGTCTTATTTGCGAATTTCTGTGCTTGCCGTCATTTCGACATTGA    247
                     |...||.||.|||.||||.||.||....|||||.||.|||||.||..|.|
BL02852___yhd    195 AAATAAATCATATATGCGGATCTCCACCCTTGCTGTTATTTCTACGCTTA    244

BSNT_01637___    248 TGATTTTGCCGCTTTGTACGCTGGGAAGCTACCTCTATTACGGAATGGGT    297
                     |.|||.|||||.|.||.||.||.||.|||||.||.||.|||||..||||.
BL02852___yhd    245 TTATTCTGCCGATCTGCACACTCGGCAGCTATCTATACTACGGGTTGGGC    294

BSNT_01637___    298 GGGAAACACAGCACCGGCAATGAGTTTATGGAAACTGCCGCAGTCACTGT    347
                     |||.|..|.||||..||.|||||..|..||.||||.||..||.|.||.||
BL02852___yhd    295 GGGCATGAAAGCAAAGGGAATGAACTGGTGCAAACCGCTTCAATGACAGT    344

BSNT_01637___    348 AGCCCTGACCATGCCGAATGTTCTTGTTGATACTTCCGGACTGAAAAGCC    397
                     .|||.|.||.|..||||||.|||..||.||||||          .|||||
BL02852___yhd    345 TGCCGTCACAAACCCGAATATTCAAGTCGATACT----------GAAGCC    384

BSNT_01637___    398 ----------AAGTGAAGCTATTTGGAAT-GAATACGGAATTCCCGCTGC    436
                               ||||.||.||.|||||||| ||| ||..|.||||||.|..
BL02852___yhd    385 CTTGTCAACAAAGTAAAACTCTTTGGAATCGAA-ACACAGTTCCCGTTAA    433

BSNT_01637___    437 AAAAGCAGATTGG------CACGAAGACGGCTGCCGTAGGGAATGAACGG    480
                     |.|||||.||.||      |||.||      .|..||.||.||||||...
BL02852___yhd    434 AGAAGCAAATCGGAAACGTCACAAA------AGTAGTTGGAAATGAAGAA    477

BSNT_01637___    481 GTTGAAATGTT-TTATAACA----AAGTAAAAGCGCCGGCAG-----TAA    520
                     ||.|||||||| ||..|.||    ||||     |.|| ||||     |.|
BL02852___yhd    478 GTGGAAATGTTCTTCGATCAGCTGAAGT-----CTCC-GCAGATTCATCA    521

BSNT_01637___    521 ACTACTATGA----CTT-----AGAAGTGAATATAACCGGCCATTACTT-    560
                     | |||.||.|    |||     |||||       |||  |.||||  || 
BL02852___yhd    522 A-TACAATCAGGAGCTTTCAAAAGAAG-------AAC--GTCATT--TTG    559

BSNT_01637___    561 --TACACATCCT-------TCAAACAAGTCTGAACAAAC---GACCGCAA    598
                       |||    |||       |||||       |||.||.|   |.||   |
BL02852___yhd    560 TCTAC----CCTGACGGCATCAAA-------GAAAAATCAGTGTCC---A    595

BSNT_01637___    599 AAGCAGA--------AAAAACGTTAAGCACATTGCCTGAAGGAACGGTAT    640
                     ||||.||        .|||||    |||    |||||||.|||||.|||.
BL02852___yhd    596 AAGCCGAGTCGATTTTAAAAC----AGC----TGCCTGACGGAACCGTAA    637

BSNT_01637___    641 CAGAGGTCTACCTTTCATATGACCGTGCATATCCGACAAAAGACGTGTAT    690
                     |.||.|..|.||||||.|.|||....|||||.||||||||.||..|||||
BL02852___yhd    638 CCGAAGCTTTCCTTTCCTTTGAAAAAGCATACCCGACAAAGGAGCTGTAT    687

BSNT_01637___    691 AACAAATTCAAAGGCTATGATGTGAGCTTTTTGTGGAACGCAATCGAAAC    740
                     .|.|||||.||||||||||||||..||.||.|||||||.||.||.|||||
BL02852___yhd    688 GAAAAATTAAAAGGCTATGATGTTCGCGTTCTGTGGAATGCGATTGAAAC    737

BSNT_01637___    741 AGAG--------AAAAACACAAATAAGA-CAGCTTCCA----CAGAACCT    777
                     ||||        ||          |||| ||   ||||    ||||.||.
BL02852___yhd    738 AGAGGGCGATTTAA----------AAGATCA---TCCATACGCAGAGCCG    774

BSNT_01637___    778 CTTGGCTATCCTGGAAAGGATTCAAA----GTTCTTGGCCGCCCTTAATA    823
                     .|.||.|.|||.|||||.||||||||    .||.|||        .|||.
BL02852___yhd    775 ATCGGATTTCCCGGAAAAGATTCAAACCGGATTTTTG--------AAATT    816

BSNT_01637___    824 CAAAAGGCAA---GTCGA-----ATGGCGATCAGTTTATCAA----CGC-    860
                     ||    ||||   |.|||     |||.|||.|||||||  ||    ||| 
BL02852___yhd    817 CA----GCAACCTGCCGAAAACGATGACGAACAGTTTA--AAGCGGCGCT    860

BSNT_01637___    861 --CCTAAAATTCATGTCCAAACACGAAAAATGGGCTCAGGTCATTTCAAA    908
                       ||||     ||||..|||..||.|.|||||||||.|...|||||||..
BL02852___yhd    861 TTCCTA-----CATGATCAAGAACAAGAAATGGGCTGAAACCATTTCAGG    905

BSNT_01637___    909 ACGGAAAGACCTGAATGTAGAT-----AACCGATTAGATTATGTAGAGAA    953
                     ..||||||||||||    ||.|     |||.|.|| ||.|||||.||..|
BL02852___yhd    906 CAGGAAAGACCTGA----AGCTTTCCAAACGGCTT-GACTATGTGGAACA    950

BSNT_01637___    954 AAACGGTGTCAATGTATACGGTTCGGTCGTTACAGGGCCAACCAAGGAAA   1003
                     .||.|||||.||.||.||.||..|.|||.||||.||.||..|.||.||..
BL02852___yhd    951 GAATGGTGTGAACGTGTATGGAGCCGTCATTACCGGACCGTCAAAAGAGG   1000

BSNT_01637___   1004 TCCAGCGCATGCTGAAAAATAAA---TCTGTAAAATCAGCGAATGTCGGC   1050
                     |..|.||   |||||..||.|||   .||||.|||.||||.||.||.||.
BL02852___yhd   1001 TTGAACG---GCTGATCAAAAAAGGGCCTGTCAAAGCAGCTAAAGTAGGT   1047

BSNT_01637___   1051 GAGGTGGAATTATGGAACTGGTAA   1074
                     ||||||||||||||||||||||||
BL02852___yhd   1048 GAGGTGGAATTATGGAACTGGTAA   1071


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