Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01693 and BL02862
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:11
# Commandline: needle
# -asequence dna-align/BSNT_01693___yhaN.1.5803.seq
# -bsequence dna-align/BL02862___yhaN.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01693___yhaN-BL02862___yhaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01693___yhaN-BL02862___yhaN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01693___yhaN
# 2: BL02862___yhaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3390
# Identity: 1863/3390 (55.0%)
# Similarity: 1863/3390 (55.0%)
# Gaps: 930/3390 (27.4%)
# Score: 4458.5
#
#
#=======================================
BSNT_01693___ 1 TTGCGAAT-TATAT-CTTTACATATCTACCAATACGGAAAATTTTCCAAT 48
|.|||| ||.|| |..|||||||.|||..||||||.|||||..|||||
BL02862___yha 1 --GTGAATATACATGCGATACATATATACGGATACGGTAAATTCGCCAAT 48
BSNT_01693___ 49 CGGACCTTTCACTTTTCCGCC--TCTCCTGTCCAAGTC--------ATCT 88
|.||| .||||||| ||||| |.|||.|| ||||
BL02862___yha 49 CAGAC--------ATTCCGCCTGTCTCC--TTCAAATCTGCATTTGATCT 88
BSNT_01693___ 89 ACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGC 138
|||||.|.|||||.||.||.|||||||||.|.|||||.||.|||||||||
BL02862___yha 89 ACGGACTCAATGAAGCCGGGAAAACGACGCTCATGTCGTTTATTGAAAGC 138
BSNT_01693___ 139 ATGCTGTTCGGTTTTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGG 188
.|||||||||||||||||||.||||||...||.||.||||||||.||||.
BL02862___yha 139 GTGCTGTTCGGTTTTCCGAAGACGAAACGGTACGAGCCGAAAACGGGCGT 188
BSNT_01693___ 189 TGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGT--------ATGG 230
..|.|||||.||..|.|||||.|..|.|||.|||||.| ||
BL02862___yha 189 CATTTACGGGGGGATGCTTGAGGTCGGACACCCTGATTTCGGCCAAAT-- 236
BSNT_01693___ 231 GGTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAAC--------- 271
|.|| |||||||||||| ||||.|||.|
BL02862___yha 237 ----CCGA--ATCGAACGGACG---------GCCGGAAAGCCCGAGCGGG 271
BSNT_01693___ 272 TAAGCGTGTACACAGAAAAGGGCGAAGTA--AAGCAGGGAGATGTTTTAA 319
|.|.|||.|||...|||.|.||| ||.| ||||.||.||.|.||||||
BL02862___yha 272 TCACCGTTTACTTGGAAGACGGC--AGCACGAAGCCGGAAGGTTTTTTAA 319
BSNT_01693___ 320 ---AGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATAT 366
|||.||||| || ||||..||||||..|.||||.|||||.||.||.
BL02862___yha 320 ATGAGCTGCTGT--CA-GGCATCGACAGGCAGCTGTATAAAGCGATCTAC 366
BSNT_01693___ 367 TCGTTCGACGTATTCGGGCTGCAGGAAATTCACGCCTTTAATCGGGACAA 416
||.||.|||||.|||||.||.||||||||.||....||.||.||.|||||
BL02862___yha 367 TCATTTGACGTGTTCGGCCTTCAGGAAATCCATAAATTCAACCGCGACAA 416
BSNT_01693___ 417 GATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTAT 466
.||.||....|||.||||.|||||.||..||||.||..||||.||..|.|
BL02862___yha 417 AATCGGCCGTTTTCTGCTGTTTTCAAGTCTGTTCGGCTCTGATGCGATTT 466
BSNT_01693___ 467 CGAAGCTTGATTCAAGGCTGACGAAGGAAAGC--GAAAGGCTCTATAAAC 514
|.|||||.|||.|..|.||...||| ||||| |||..|||.|.|||||
BL02862___yha 467 CCAAGCTGGATGCCGGCCTCGTGAA--AAAGCAGGAAGAGCTGTTTAAAC 514
BSNT_01693___ 515 CAAATGGGCGAAACCCTCAATTGAACCAGGAGCTGGAAACGCTTAAGCA- 563
|.||.||..|.||.||..|..|||||||||||||.| |.||.||||..|
BL02862___yha 515 CGAACGGAAGGAAGCCGGAGCTGAACCAGGAGCTTG-ATCGGTTAAAAAG 563
BSNT_01693___ 564 GCTGGCAGTGAAGCT---AAAACAGGCTGAAGCAGAGGAAGCGGGCTATC 610
|||..| |||||.| |||| ||||..||||...|||||..||||||.
BL02862___yha 564 GCTTTC--TGAAGATTTGAAAA-AGGCGAAAGCGCGGGAAGGCGGCTATT 610
BSNT_01693___ 611 ATCAGCTTCTCGGGGAAAAACGAA--------TGCTTGAAGCCCGCCTTG 652
|.|..||..| ||||||| .|| |||.||
BL02862___yha 611 ACCGTCTCTT-------AAACGAAAAAAAAGGCGC-TGAGGC-------- 644
BSNT_01693___ 653 CAGCCG----CGGAAACCG---AATTG---AAAGA----GACGGCGGGAC 688
|.|| .|||||.|| ||.|| ||||| || ||
BL02862___yha 645 --GTCGATAAAGGAAAGCGGACAACTGCTCAAAGATCTTGA--GC----- 685
BSNT_01693___ 689 ATATC-CG------AATGATTGAGGGAGCGATTGA--------------- 716
||| || || ||.|||...||.|||||
BL02862___yha 686 --ATCTCGTCTTACAA--ATCGAGCAGGCCATTGAGATTCTGCCGGCGGC 731
BSNT_01693___ 717 -GCGAAAA----CCATTGCTAAATGAAAAAGCGACA-CTCGAACA----- 755
|||.||| ||| ||||||.|| .|| |||| ||
BL02862___yha 732 CGCGGAAATGCGCCA--GCTAAAAGA-------GCAGCTCG--CATCCCT 770
BSNT_01693___ 756 -GGTGATTGCAGAATTTCCGGAACATGCAGGACAATTTCCTGCTGA---C 801
||.|..| ||||| ||| || |..||||| |.|| |
BL02862___yha 771 CGGCGGCT-CAGAA------GAA-----AG--CCGTTTCC--CCGAAGGC 804
BSNT_01693___ 802 GGACTGCATC-AGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAG 850
||||| ..|| ||||.|||||....||||||||.||.||.||.|||.|.|
BL02862___yha 805 GGACT-TTTCGAGCTCGAAAAGCTCGAATCCCACCTGCATCCAAAAGCGG 853
BSNT_01693___ 851 CACAGCTTGAGGCGCTTCGGGTG---AAGATGGCGGAGTTGGACAAACAG 897
|.|||||..||||||| ||..| ||.|..|||| .|||| |||||
BL02862___yha 854 CTCAGCTGAAGGCGCT--GGAAGAAAAAAAGCGCGG-TTTGG---AACAG 897
BSNT_01693___ 898 AG-------------GCAAAAGCTTA-----TCCCCGATAAAGAACTATT 929
.| |||...|||.| |||.|||..|.|||
BL02862___yha 898 CGCGCCGCCGCTTTTGCACCGGCTGAAGACTTCCTCGAGCACGAA----- 942
BSNT_01693___ 930 GGCGAAAGAAACGCTGATACAAGAGCTTT---CGGCAG----CGTTTCAT 972
|.|||| ||.| ||||||||| |||| | |||||
BL02862___yha 943 GCCGAA------GCGG----AAGAGCTTTTAACGGC-GTATCCGTTT--- 978
BSNT_01693___ 973 ATGTACCAATCCTGTGGAGAACAGCTGGCAGCCATTCA-GGCACAGCTGC 1021
|||||.||.|.|...|||.|..|.|| |.|.||.| .|.||||||.|
BL02862___yha 979 ---TACCAGTCGTATACCGAAAAAATCGC-GTCTTTGACTGAACAGCTTC 1024
BSNT_01693___ 1022 GCCAG----GCGTCTGCGCAGAC-------AGCGGCAGGGCTGGAACAGC 1060
.|||| .|| ||| |||| |||||.||.|..|
BL02862___yha 1025 ACCAGATAAACG--------GACGGGTTCAAGCG---GGGCTTGACCGCC 1063
BSNT_01693___ 1061 T-CAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGA 1109
| | |||..||.|||.|.||..||||.|||..|.|||||.|.|||||
BL02862___yha 1064 TGC----AAATCGAGGAATACGATATCCTCAATGCGGACACCACGTATGA 1109
BSNT_01693___ 1110 TTATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAG--GCAAG 1157
.||.||.|||.|.||.|||.||.|.||.|||..|||..||.|| ||..|
BL02862___yha 1110 ATACGAGTGGAAACTGCAGGAAACCGTTCAGGCATACATAGAGCTGCGCG 1159
BSNT_01693___ 1158 AGACAGAAAACGGCAGCTTGACGAGACATTTGAACTTGCCCGGCAAGAGC 1207
| ||.| ||.|||..|||.||||||...|||||.|..||..||...||.|
BL02862___yha 1160 A-ACTG-AAGCGGTCGCTCGACGAGCGGTTTGAGCAGGCGAGGGCTGATC 1207
BSNT_01693___ 1208 TGGAAGACACGGAAAAGGCCGTTCGTGCCGCTTCGTCCGC--------GA 1249
||||.||..|||||.||||| |.||||||| .||.|| ||
BL02862___yha 1208 TGGAGGAAGCGGAACAGGCC---CATGCCGCT--CTCAGCAATGAAGTGA 1252
BSNT_01693___ 1250 TTCTTGAAGATAGCC--AAAGAAAAGATAAAGAA-------GCTGCTCTT 1290
|.|..||.|||..|| |||.||||| .||||| ||.|| |||
BL02862___yha 1253 TGCCCGATGATGTCCGAAAACAAAAG--GAAGAAACCCTTGGCCGC-CTT 1299
BSNT_01693___ 1291 AGAGCAT------------ATGATGAAACACAGGGGCAGCACCAAGAGC- 1327
||.| |||..|.||..|.|| ||||||
BL02862___yha 1300 ---GCGTCCGCCGGCGGTCATGCCGGAAGGCGGG---------AAGAGCT 1337
BSNT_01693___ 1328 -------AAGC----------GAAGCTCAGAGAACAGCTAACGTTTTTTG 1360
.||| ||||| .|||||| .||.|||
BL02862___yha 1338 GATCCTTCAGCTGTCCTATCTGAAGC---AAGAACA--AAAAGTT----- 1377
BSNT_01693___ 1361 AAAGACAGCAGGCTAAACAGAA-AAAGACTGTCATTGCAG-------TTG 1402
.||.|.||.|||| ||.|||.|...||||.| |||
BL02862___yha 1378 ---------CGGATGAAAAGAAGAAGGACCGCTTTTGCGGGAGCGCTTTG 1418
BSNT_01693___ 1403 GTATGTTGTT----CATCGTT-------CTCTTTTCTCTGCTGCAGCAAT 1441
...||.|.|| ||.|.|| ||||||| |..||.|.|
BL02862___yha 1419 CGCTGCTTTTGCGGCAGCTTTTGCGGCGCTCTTTT------TCAAGGAGT 1462
BSNT_01693___ 1442 GGATTCCCGCCATAAGTTTCGGTGCT------GCACTTATTGTG----TA 1481
|| |||||| ||.||| ||.|..|||.|| ||
BL02862___yha 1463 GG-TTCCCG-----------GGCGCTTTGCTCGCGCCGATTTTGCTGATA 1500
BSNT_01693___ 1482 TT---GGCTTGTA---TCAGGAAAATC----GTCTTCTCG---------- 1511
|| .||||.|| |.| ||||.| |.|||| ||
BL02862___yha 1501 TTTGCCGCTTTTATTTTAA--AAAAGCCTGAGCCTTC-CGCGGCGGCGGC 1547
BSNT_01693___ 1512 ----------AAACAGCCGAGA-------GACAAGACAG-----CCCATG 1539
|||||||.| || ||| .|||| |..|.|
BL02862___yha 1548 TTTTATTCAAAAACAGCTG-GATGATATTGAC--CACAGCGGTTCAAAAG 1594
BSNT_01693___ 1540 ACGGA-TATTTCTCCAGCAGA-AGCTGAAATGCTT--AGAGAAGCGTTAT 1585
.|||| || ||| || ||| |||| ||.||.|.|.|.|
BL02862___yha 1595 GCGGAGTA-------AGC-GACAGC------GCTTTAAGGGAGGAGCTGT 1630
BSNT_01693___ 1586 GGGAGGATGACCGCAATAA-----GCAGCACCTTCTCACACAGCGTGCAG 1630
||.||||.|||| || |||||.||||.||.|..|.|..||.|
BL02862___yha 1631 GGAAGGACGACC-----AAACCCGGCAGCTCCTTATCGCCAAACAAGCTG 1675
BSNT_01693___ 1631 CGCTCCAG-CAAAAGGAGGCGGCGTATGAAAGGGTCATCCAGCAGTTTGA 1679
.||| ||| ||.||.||.||||..||||||||.|..||.||..|.||.||
BL02862___yha 1676 AGCT-CAGACAGAAAGAAGCGGAATATGAAAGAGCGATTCAAAAATTCGA 1724
BSNT_01693___ 1680 ACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACA----CAGGTTGAGCGT 1725
|.||||||||...||.|| ||||||.|..|| .||...|||||.
BL02862___yha 1725 AGAGTGGGAAAAGGATAT----CCGTCCGTATCAGGAGAAGACCGAGCGC 1770
BSNT_01693___ 1726 TTTATGAATGAGCTCGGA---TTTAAGGAA--GATCCATCATTTTT-GCT 1769
|.|.|.||.||||| || ||| .|| ||.||.|||||||| ||
BL02862___yha 1771 TATTTAAAAGAGCT--GAATCTTT---CAATTGACCCGTCATTTTTAGC- 1814
BSNT_01693___ 1770 TGATGCATACAGC-TTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAG 1818
||||||.||| || ||.||.|||||..|.|.|.|.|||.|...|||||||
BL02862___yha 1815 TGATGCGTAC-GCTTTGATTAAGGAACTCAGAGAGGAAATTTTGAAAAAG 1863
BSNT_01693___ 1819 C------------ATGAGCTGA-CCATTGAAGCAGGCAGGCTGAAAAAGC 1855
| |.||.|||| || ||...||.|||.|||||||
BL02862___yha 1864 CGGGATATCGAGAAGGAACTGAGCC------GCCTTCATGCTAAAAAAGC 1907
BSNT_01693___ 1856 A-CCGGAGAACATTCGAAGAACGCG--TCAGTATGCTT----CTTCCCGT 1898
| || ||.|||| ||.| |.||.|.|||| |.||||
BL02862___yha 1908 ATCC--------TTTGAAG--CGGGATTGAGAAAGCTTGTCACATCCC-- 1945
BSNT_01693___ 1899 GAATCAGAGT--CAGGATATCTCCATTTCGGA--CGCCC----------- 1933
||||..| |.|| |||| ||.||
BL02862___yha 1946 ---TCAGCCTTGCGGG------------CGGAAGCGTCCAAGAGCAGGTG 1980
BSNT_01693___ 1934 -TTCACACATTGCGGAAAAACATTGAACGTG------AAAAAGAAATTGA 1976
|||| ||.|||||.| ||.|.|| ||||| ||
BL02862___yha 1981 TTTCA------GCTGAAAAGC---GAGCTTGAGTCCCAAAAA------GA 2015
BSNT_01693___ 1977 GAA------GCAAAAAAAGGAAATTGAAACAGATAT-TCATTATACAAAG 2019
||| .||||||.|| |||.||||..| ||.|| ||||
BL02862___yha 2016 GAAACTTCGTCAAAAACAG------GAAGCAGACGTGTCTTT----AAAG 2055
BSNT_01693___ 2020 ---------GAACAGATGCTTGAACTTGAGCAAGA-----AATACAGTAT 2055
|||||.||....||.||.|.|.|||| |||||
BL02862___yha 2056 CATGCGGCCGAACAAATCAAAGAGCTGGCGAAAGAGGTGGAATAC----- 2100
BSNT_01693___ 2056 TTCCACGCACAGATT---GAACAGTTATTTGCCGCGGCTGCTGCAAAAGA 2102
|||||..|.||.||| |||| |.||| |||||..
BL02862___yha 2101 TTCCAATCTCAAATTGCCGAAC---TCTTT-------------CAAAAAG 2134
BSNT_01693___ 2103 CA---------------GAGATGCGTTTTT-----TGCCATAGC-CGACA 2131
|| ||||| |||..| ||.|..||| || |
BL02862___yha 2135 CAGGGGCGGACGGCCGTGAGAT--GTTCGTCGGACTGGCGAAGCGCG--A 2180
BSNT_01693___ 2132 TCAGCAGGCAATTGAAGGATACGGAGAAC--------AAGCTTCATCACG 2173
||| ||.|| ||| .||||| |.|||
BL02862___yha 2181 TCA--AGCCA---GAA-------AAGAACTAACGGCTAGGCT-------- 2210
BSNT_01693___ 2174 TAAACGCACAGCTTCAAGGCGGGTACCCGG-----AGGAACTTGAACTGG 2218
||..|||||..||.|.|.| |.||| ||| ||..||| ||
BL02862___yha 2211 ----CGGGCAGCTCAAAAGAGAG--CTCGGCAGACAGG-ACGAGAA--GG 2251
BSNT_01693___ 2219 CGGAT----TC----CAATACGCTTTCT----GAATTGAAAGATAAGCAA 2256
|.|.| || ||...|.||.||| |||.||||||..||||
BL02862___yha 2252 CCGTTATGCTCGCCTCAGGCCACTCTCTGGCAGAACTGAAAGGAAAGC-- 2299
BSNT_01693___ 2257 TTTGTTGAGA---ATGAAAGAAAAGAGCG--------------GCTGACT 2289
|.|..|||| |.||| ||||||||| ||||||.
BL02862___yha 2300 -TGGCCGAGACTCAGGAA--AAAAGAGCGCGCATAGAAAAGCAGCTGACA 2346
BSNT_01693___ 2290 GA------GGAGATCGAGCGGCTCCGCAGCCAAAT-----CGCACTGCTC 2328
|| |.||| || |||||| ||| .|||..||||
BL02862___yha 2347 GAAGAAAGGCAGA-CG-GCGGCT---------AATTTCCATGCAGAGCTC 2385
BSNT_01693___ 2329 TCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGACCTCAA 2378
.| ||| |.|.||||..||.|||..|||.||.| |
BL02862___yha 2386 GC-------CAG-----ACTTGAGGAATCAGGAGCGGTATCGG------A 2417
BSNT_01693___ 2379 GCT------TCAAACCGAAATGCAAAAAGATCGTGTAAAAGAAACGGCTA 2422
||| |||.||||..|||||||||||.||.||....|||..|||.|
BL02862___yha 2418 GCTTGCCTATCAGACCGGGATGCAAAAAGAGCGGGTCGCCGAATTGGCCA 2467
BSNT_01693___ 2423 AAAAATGGGCCTCGATACAA-ATGGTCAAACAGGTGATCAGAAACAA-AT 2470
||||.|||||..|..| ||| .||.||...||||.|.||..|||||| ||
BL02862___yha 2468 AAAAGTGGGCAGCCGT-CAAGCTGATCCGGCAGGCGGTCCAAAACAAGAT 2516
BSNT_01693___ 2471 ---TGGAGCGGCATAA-AAAAATCGAGCTTCCGCGCCTTCTAGAGACGGC 2516
||.| ||||| ||...||| |||||||...||..||.|||||||
BL02862___yha 2517 AGATGAA----CATAAGAAGGTTCG-GCTTCCGAAGCTGTTACAGACGGC 2561
BSNT_01693___ 2517 AGGAGAATTCTTCCGCCCTCTGACTGACGGAAACTACCAAACCATTTATT 2566
.|.|..|||..|...|||..||||||.||||.|.|||.|||..|||||||
BL02862___yha 2562 TGAAACATTACTGAACCCATTGACTGCCGGACAATACGAAAAAATTTATT 2611
BSNT_01693___ 2567 TTTCCGAAACGGATGATTCGATCATGGTTATGC----ATCGCGATGGAAC 2612
||||.|||||.||||||||.||.|||||.|||| | ||.|||.|
BL02862___yha 2612 TTTCTGAAACAGATGATTCCATGATGGTCATGCGGAAA----GACGGAGC 2657
BSNT_01693___ 2613 TGTCTATCATGCG--GAAGAGCTGTCACAAGGGACGTGTGAACAGCTGTA 2660
|||.|..|||| .|.||.|||||.||.|.|||.|||||||||||.||
BL02862___yha 2658 --TCTTTTTTGCGCACACGAACTGTCTCAGGCGACTTGTGAACAGCTCTA 2705
BSNT_01693___ 2661 TACAGCGATCCGATTTGCTTTGGCCGTTACGCGCC-------AGGGTGGG 2703
|..||||||||||||.|||.||||| |.|.|| ||..| |
BL02862___yha 2706 TTTAGCGATCCGATTCGCTCTGGCC----CTCTCCCATCAAAAGAAT--G 2749
BSNT_01693___ 2704 TCAAAGCTT-CCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGG 2752
||||| || |||||||||||.||.|||||.|||||.||.||.||.||.|
BL02862___yha 2750 TCAAA--TTGCCGTTCCAGCTGGATGACAGCTTTGTCCACTTCGACCAAG 2797
BSNT_01693___ 2753 AAAGGCTGAAACGTGTATTACATGTTCTGTATAATTTA---------TCT 2793
|.|||.|.|| |||.||.|||.|.|.|||| ||
BL02862___yha 2798 AGAGGTTTAA---------ACAAGTGCTGAACATTTTAAAAAAGCTTTC- 2837
BSNT_01693___ 2794 GAAGGCGGTAG----GCAGATTTTGTATTTTACATGCCATGAGCACGTAA 2839
|||| |.|| |||.||.|||||||||||.||.|||||.||.||||
BL02862___yha 2838 --AGGC-GAAGATCAGCAAATCTTGTATTTTACGTGTCATGAACATGTAA 2884
BSNT_01693___ 2840 AAGATGCATTTC----ATAGCAGCCAAATCATCCATTTGGTGTCAT---- 2881
.|||.|| |||| || |.|| |..|.|| |.||.||.|.|
BL02862___yha 2885 GAGAAGC-TTTCCGCGAT-GAAG--ATGTGAT---TCTGCTGCCTTCCGG 2927
BSNT_01693___ 2882 AA-------------------------------------- 2883
||
BL02862___yha 2928 AATGAAAAAGGTGGAAGGAAAGGAGATGACTAACAAATAA 2967
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