Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01691 and BL02863
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_01691___yhaO.1.5803.seq
# -bsequence dna-align/BL02863___yhaO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01691___yhaO-BL02863___yhaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01691___yhaO-BL02863___yhaO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01691___yhaO
# 2: BL02863___yhaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1354
# Identity: 849/1354 (62.7%)
# Similarity: 849/1354 (62.7%)
# Gaps: 254/1354 (18.8%)
# Score: 2452.0
#
#
#=======================================
BSNT_01691___ 1 ATGTTGACTGATCTAACCTTTATTCATGCGGCAGATCTTCATCTTGACAG 50
|||||..|..|.||.||.|||||||||||||||||.|||||.|||||
BL02863___yha 1 ---TTGACAAACATCACTTTCATTCATGCGGCAGATCTGCATCTGGACAG 47
BSNT_01691___ 51 CCCGTTTTACGGGAT-ATCGCATCTGCCGGAGCCGATTTTTGCCCGGATT 99
.||||||.||||.|| |.| ||.||.||.|||..|||||.|...|||||.
BL02863___yha 48 TCCGTTTCACGGCATCAGC-CAGCTTCCCGAGGAGATTTATCAGCGGATC 96
BSNT_01691___ 100 AAAGAAAGCACGTTTGCAAGCG-TGAGACATATGAT--AGAC--GCCGCA 144
|||.|.|||||.|||..||||| ||| |.||.||.| || | || ||
BL02863___yha 97 AAAAACAGCACATTTAAAAGCGCTGA-AAATGTGTTTAAG-CTTGC--CA 142
BSNT_01691___ 145 GTGAGAGAGCACGTTGATTTCATTTTGCTGGCGGGAGATCTGTTTGATGA 194
.||| .||.||.|..||.|||||||||||.||.||.||.|||||.||.||
BL02863___yha 143 TTGA-TGAACAGGCCGACTTCATTTTGCTTGCCGGGGACCTGTTCGACGA 191
BSNT_01691___ 195 AGCCAATCGAAGCTTAAAGGCTCAGCTCTTTTTGAAAAAAC-AGTTTGAA 243
|||.||.||.||.|||||.||.|||.|.|||||||.||||| |.|||.||
BL02863___yha 192 AGCAAACCGCAGTTTAAAAGCACAGATGTTTTTGAGAAAACAATTTTTAA 241
BSNT_01691___ 244 AGACTCAGAGAGTGCGGGATTTCGGTATACGTCATCTTTGGGAATCACGA 293
|| ||.|.||||..|...||....||.||.||.||.|||||.||||||||
BL02863___yha 242 AG-CTTAAAGAGAACAACATCCAAGTCTATGTGATTTTTGGCAATCACGA 290
BSNT_01691___ 294 TCATCTTGGCGGGGAGTGGACGCCGATTGAATGGCCTGAGAATGTCCATA 343
||||||.|||||.||.||||||||||||||||||||.||.||.|||||.|
BL02863___yha 291 TCATCTGGGCGGCGATTGGACGCCGATTGAATGGCCGGACAACGTCCACA 340
BSNT_01691___ 344 TTTTTTCGTCCGCTG---TTCCAGAAGAAAAATCGTTTTTTAAAGAAGGC 390
|.|||||..|.|..| || ||||||||||||||||..|||||.|||
BL02863___yha 341 TCTTTTCAGCGGAAGACATT---GAAGAAAAATCGTTTTACAAAGACGGC 387
BSNT_01691___ 391 AGGCGCATAGCAAGCATTTACGGCTTCAGCTAT--CAAGCAAGAGCAG-T 437
.|||.|...||||||||.|||||||.||||||| |.||| |..||| |
BL02863___yha 388 CGGCTCGCCGCAAGCATCTACGGCTACAGCTATCCCGAGC--GCTCAGTT 435
BSNT_01691___ 438 GACGGAAAACCAAGCCGCCCGCTATCGGAGATCA--------ACTGACGC 479
.|.| ||||...|.||||| ||.|||| ||.|||||
BL02863___yha 436 TATG-----CCAATAAGGCCGCT----GAAATCAAAAAAACGACCGACGC 476
BSNT_01691___ 480 ACCGTTTCATATCGGCATGCTCCACGGCACGCTGTCAGGATCTGAA---- 525
.||.||.||||||||||||.|.||.||.|||||.||.|| |.|
BL02863___yha 477 GCCCTTGCATATCGGCATGATTCATGGAACGCTTTCCGG----GGAGAGC 522
BSNT_01691___ 526 GGACACGATCCGTATTGCCCGTTTACACATGACGACCTCGTGAAAAGCGG 575
||.||.||.|||||.||.||.||..|.|.|.|.|| ..|.||||.|||
BL02863___yha 523 GGCCATGACCCGTACTGTCCTTTCTCCCTTCAAGA---TTTAAAAAACGG 569
BSNT_01691___ 576 ---GATGGATTATTGGGCGCTTGGCCATATACATAAACGCCAGGTTCTAT 622
|||||||||||||||||||||.||||||||||||.|.|||||..|.|
BL02863___yha 570 ACAGATGGATTATTGGGCGCTTGGACATATACATAAAAGACAGGTCATTT 619
BSNT_01691___ 623 CTGCCGAGCATCCGGCAGTCATTTACCCGGGAAACACGCAAGCACGCCAT 672
|.||||...|||||||.||.|||||.|||||||||||.|||.|.||||||
BL02863___yha 620 CAGCCGCCGATCCGGCGGTGATTTATCCGGGAAACACACAATCCCGCCAT 669
BSNT_01691___ 673 ATAAAGGAGACGGGAGATAAAGGTTATTATCTCGTTCATGT-----GACA 717
||.|||||.|||||.||.|||||.|..||||||||..|||| |
BL02863___yha 670 ATGAAGGAAACGGGGGAGAAAGGCTGCTATCTCGTCAATGTTTGCGG--- 716
BSNT_01691___ 718 AACGGAGATATATCTTATGAATTTCAGAGAG-CGCAT--GATGTCCTGTG 764
||||||..|.||.|..|||||| |.|| ||.|| |||||||||||
BL02863___yha 717 --CGGAGAACTGTCCTTCGAATTT---AAAGCCGTATCGGATGTCCTGTG 761
BSNT_01691___ 765 GGAAAAAGCGGC---GGTTGATGTGACGGAGGCAAAGAATATGACAGCCC 811
||||| |||| ..|.|||.|..|.|.|.|||||.|.|||||||..|
BL02863___yha 762 GGAAA---CGGCCAGCATCGATATCTCCGGGACAAAGCAGATGACAGAGC 808
BSNT_01691___ 812 ---TCTTCCAAATGGTGGAGGACACG----TTTTCGAAGC-TGCGGAAAA 853
||..||..||| |||| .|||| ||.| |.|.|||||
BL02863___yha 809 TGATCAGCCTCATG--------CACGATGCCTTTC-AATCTTTCAGAAAA 849
BSNT_01691___ 854 AGGGG--AGCCCTGTTTGTGTAAGGCTTGTTTTACAAGGGAC-GGCGCCG 900
||.|| ||||| |..||.||.|.|.|.|| |.|||| || .
BL02863___yha 850 AGAGGCAAGCCC-GCATGCGTCAAGATGGT------ATGGACAGG----A 888
BSNT_01691___ 901 GAA-------------TGGCTGCTGGAGGCGCCAAAAGGCACCTTGGATG 937
||| ||||.|..|||...||| ||||.|..|||.|
BL02863___yha 889 GAAACACCCTCTTATTTGGCGGAAGGACAGGCC----GGCATCGCGGACG 934
BSNT_01691___ 938 AGTTTCTTGAAGC-TCTT-CAGGAACAAGAAGCGGAAGAGGAACA---TT 982
||.|.||||| | |||| ||.|||.||||| ||| ||||||.| .|
BL02863___yha 935 AGATCCTTGA--CATCTTCCATGAAGAAGAA-CGG--GAGGAAGACGCGT 979
BSNT_01691___ 983 TCGTTTGGCCTCTTA--GATTGGACGATGAGACAGAAAACGAAG--CAAA 1028
||.|.||| |||| | |||| ||||| ||||
BL02863___yha 980 TCATCTGG---CTTACCG------CGAT-----------CGAAGATCAAA 1009
BSNT_01691___ 1029 CCTAACAAACCTTG------ATC----------CTTTTTT--TGGCGGTT 1060
||.|.....||||| ||| ||||||| .||.|.|
BL02863___yha 1010 CCGATGCCGCCTTGTCGGGAATCGAACGGGACGCTTTTTTCCAGGAGCT- 1058
BSNT_01691___ 1061 TATTTG-AAGACAT---TGA-TCGCAGCGATCTGTCAGACGTG---CTGG 1102
|||| ||||.|| ||| |..|| |..|.|||| |.|| ||.|
BL02863___yha 1059 --TTTGCAAGAAATCCATGAGTTTCA---AGATTTCAG-CCTGATTCTTG 1102
BSNT_01691___ 1103 AAGGGCTTGAGCGGCATCCAGTGTATAGAAGGCACGCGGACCGGTTTAGC 1152
|.|...|.|||||||||||.||.|.||||||.||||..||.|.|||||
BL02863___yha 1103 ACGATTTGGAGCGGCATCCGGTCTTTAGAAGACACGGAGAGCTGTTTA-- 1150
BSNT_01691___ 1153 CAAGAGGAGG---TAAAGGAAAT----AAAAGAGCAGGCACAGATATTAT 1195
|.|||||.| |...|||.|| | .||||||
BL02863___yha 1151 -ATGAGGAAGACTTCCGGGACATTCGCA----CGCAGGC----------- 1184
BSNT_01691___ 1196 TGAAAAGACAGCTTAAGGTGCTTGATACATGA------------------ 1227
|||||| ||.|| ||||| |||||
BL02863___yha 1185 TGAAAA-ACTGC------TGCTT----CATGAACTGAAGACATTGAAAAG 1223
BSNT_01691___ 1227 ---- 1227
BL02863___yha 1224 ATAA 1227
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