Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01687 and BL02868
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_01687___yhaR.1.5803.seq
# -bsequence dna-align/BL02868___yhaR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01687___yhaR-BL02868___yhaR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01687___yhaR-BL02868___yhaR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01687___yhaR
# 2: BL02868___yhaR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 896
# Identity: 520/896 (58.0%)
# Similarity: 520/896 (58.0%)
# Gaps: 199/896 (22.2%)
# Score: 1398.5
#
#
#=======================================
BSNT_01687___ 1 ATGTATAGGAGAAAGAAAAAAGAAAGCGTATACTTGGAGGTGCTTCATAT 50
||
BL02868___yha 1 ------------------------------------------------AT 2
BSNT_01687___ 51 GGAGTTTGTTCAATATGCATGTAATG--------GGGCCGTTGCAGAGAT 92
|||.|.| .|||| |||.||.| ||| .||...||.||
BL02868___yha 3 GGAATAT-ATCAA-----ATGGAAAGACGAAGACGGG--ATTTTTGAAAT 44
BSNT_01687___ 93 TATCCTGAATCGGCCTGATGCCCATCACGCCCTGAATGAACAGTTGCTGT 142
|.|.||||||||..||||.||..|..|.|||.||||||||.|..||||..
BL02868___yha 45 TGTACTGAATCGCTCTGAGGCGTACAATGCCTTGAATGAAAAAATGCTTG 94
BSNT_01687___ 143 CTGAATTGAAGGAGGCAGTCGAAATGGCG-GCTGC------AAGCGAGGC 185
..|||.||||.||.|| .|.||| |.||| ||||||..|
BL02868___yha 95 AAGAACTGAATGAAGC-------TTTGCGTGTTGCAGAGGAAAGCGAATC 137
BSNT_01687___ 186 GCT-CATCGTTCTTCTGAGAGGAAGCGGGAAAGGCTTTTCGGCCGGTGGT 234
||| |.|| |.|||.|||||||.|||||.|||||.||||||||.||.||.
BL02868___yha 138 GCTGCTTC-TCCTTGTGAGAGGCAGCGGCAAAGGATTTTCGGCAGGCGGA 186
BSNT_01687___ 235 GATATCAGAATGATGACGTC------AGAGCATGAC-----------CCT 267
||.||.|..||||||..||| |||.||.||| |.|
BL02868___yha 187 GACATTAAGATGATGCTGTCTTCCGGAGATCAAGACAGCTCCGCCCGCGT 236
BSNT_01687___ 268 GAT-----CAATTTAAACGGCTGATGGATACGATTGAGGCTGTCACCTTG 312
.|| |||||| |||| .||||.|| ||
BL02868___yha 237 CATTGACACAATTT------CTGA-------AATTGCGG---------TG 264
BSNT_01687___ 313 AA--TTTATATCAG-ATGAAGAAAGTGACAATTGCAGCCATTCATGGTGC 359
|| |||| ||| |||..|||..||||.|..||.||..|.||.|||||
BL02868___yha 265 AAGCTTTA---CAGCATGCCGAAGATGACGACAGCGGCTGTCCACGGTGC 311
BSNT_01687___ 360 TGCTGCGGGACTGGGCCTGAGTTTGGCGCTTTG-TGCGGACATTGTGCTC 408
.||||||||.|||||..||||..|.|||||..| ||| |||..|||.||.
BL02868___yha 312 GGCTGCGGGTCTGGGATTGAGCCTCGCGCTCAGCTGC-GACCATGTACTG 360
BSNT_01687___ 409 GCTGAAAAAAACGCCGTCCTCGCGATGAATTTTATCGGCATTGGGCTTGT 458
|..||||||.|.||....||.||||||||||||||||||||.||||||||
BL02868___yha 361 GTCGAAAAAGAGGCGAAGCTGGCGATGAATTTTATCGGCATCGGGCTTGT 410
BSNT_01687___ 459 TCCGGACGGCGGAGGACA-TTATTT-----GCTGAAAAAAAGAATCGGTG 502
|||.|||||.||.||||| ||.||| ||.| ||||||||||
BL02868___yha 411 TCCCGACGGAGGCGGACACTTCTTTTTAGAGCGG------AGAATCGGTG 454
BSNT_01687___ 503 AAGCAAAAGCGAAAAAACTGATTTGGAGCGGAAAAAAACTATCTGCCTCA 552
||.|....||.|||.||.|||||||||||||.||||||.|..|.|...|.
BL02868___yha 455 AAACTGCGGCCAAAGAATTGATTTGGAGCGGGAAAAAATTGACGGGGGCC 504
BSNT_01687___ 553 GAAGCTGC-CGATATGGGGCTTCTTGATGG--GAC-----ATTTGCCGGA 594
||||| || ||| ||||| .|||.| ||| |||...|||.
BL02868___yha 505 GAAGC-GCACGA------GCTTC-GGATCGCAGACGCCGTATTCAGCGGG 546
BSNT_01687___ 595 GAC-CCTGCCG-AAGGCGCAAGACCCAT-TATC--GAAACCCTGTTGGCC 639
||| ||.|||| ...||| |.||| |||| ||||..||..||..|
BL02868___yha 547 GACTCCGGCCGTTTTGCG-----CGCATCTATCTTGAAAAGCTTCTGCAC 591
BSNT_01687___ 640 TCCCCTCTTTTGGCGATGATCGAAACGAAAGCTATTTTTCAAAGCCTCCA 689
.|.||.||....||||||||.||.||.|||...||.|.|| |.||.|..|
BL02868___yha 592 GCTCCGCTGGCAGCGATGATTGAGACAAAAAAGATCTATC-AGGCGTTGA 640
BSNT_01687___ 690 GATTGAAGAA--CTG-AAAAAAGTGCTATCCCTTGAGCGC-----AGCGC 731
||.||.|.| ||| |.|||| |.|||||.|.| |.||.
BL02868___yha 641 -ATGGAGGCAGGCTGCAGAAAA-------CGCTTGAACTCGAGAAAACGG 682
BSNT_01687___ 732 CCAAGA-GAGAATGAGAAGGACCAAG-GATCACCAAGAAGGAATCCGTGC 779
||.||| ||.||||||...|| |||| ||.||.||.|||||.|||||.||
BL02868___yha 683 CCCAGATGAAAATGAGGCTGA-CAAGCGACCATCAGGAAGGGATCCGCGC 731
BSNT_01687___ 780 CTTTTTAGAAAAACGGGAGCCGAAGTTT---------CAAGCGTAA 816
.|||||||||||.||..|||||.|.||| ||||..|||
BL02868___yha 732 ATTTTTAGAAAAGCGCCAGCCGCAATTTAACCGTCAGCAAGTATAA 777
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