Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01665 and BL02872

See Amino acid alignment / Visit BSNT_01665 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence dna-align/BSNT_01665___yheH.1.5803.seq
#    -bsequence dna-align/BL02872___yheH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01665___yheH-BL02872___yheH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01665___yheH-BL02872___yheH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01665___yheH
# 2: BL02872___yheH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2143
# Identity:    1438/2143 (67.1%)
# Similarity:  1438/2143 (67.1%)
# Gaps:         245/2143 (11.4%)
# Score: 4581.5
# 
#
#=======================================

BSNT_01665___      1 ATGAAAATAGGAAAAACG-TTATGGAGATACGCACTTCTTTATCGAAAAT     49
                     ||||.||.||||||||.| ||.|..| |||.||.|||||||||..||||.
BL02872___yhe      1 ATGACAACAGGAAAAAGGCTTTTCCA-ATATGCGCTTCTTTATAAAAAAA     49

BSNT_01665___     50 TGCTGATCACAGCCGTCCTTTTGCTAACTGTTGCCGTCGGTGCAGAACTG     99
                     |.||.|||...||..||.|..||||.||..|.||||||...||.||.|||
BL02872___yhe     50 TTCTCATCTGGGCGCTCGTCATGCTGACGATCGCCGTCACAGCCGAGCTG     99

BSNT_01665___    100 ACTGGGCCCTTTATTGGCAAAAAAATGATAGACGACCATATCCTCGGCAT    149
                     ||||||||..|.||.|.||||||.|||||.|||||.|||||.|||||.||
BL02872___yhe    100 ACTGGGCCGATGATCGCCAAAAAGATGATCGACGATCATATTCTCGGAAT    149

BSNT_01665___    150 TGAGAAAACATGGTATGAAGCTGCGGAAAAAGA--TAAAAATGCCGTTCA    197
                     |||.|||||.|||||||||.|    ||.|.|||  |..||||   .|.|.
BL02872___yhe    150 TGAAAAAACGTGGTATGAAAC----GACAGAGAACTCGAAAT---ATACT    192

BSNT_01665___    198 GTTTC----------ACGGCGTCTCATATGTC-----AGAGAGGACCGA-    231
                     |||||          |.||     .||||.||     |||.|||||.|| 
BL02872___yhe    193 GTTTCCTACAAAGGAAAGG-----AATATATCAGGGAAGACAGGACAGAC    237

BSNT_01665___    232 --TTGCAGGAGCCTGTTTCAAAAGC-AAAAGAAGCGCATATTTATCAAGT    278
                       || |||    |||    |||||| ..|.||||..||.||.|.||||||
BL02872___yhe    238 CCTT-CAG----CTG----AAAAGCTGCAGGAAGTTCACATCTTTCAAGT    278

BSNT_01665___    279 GGGAATGGCGTTCTATTTTGTTG---ATCAGGCTGTCAGCTTCGACGGGA    325
                     .||.|||...|.|||.|||||.|   |.|.|| |.||  |||.||||||.
BL02872___yhe    279 CGGTATGAACTACTACTTTGTGGGGAAACCGG-TTTC--CTTTGACGGGG    325

BSNT_01665___    326 ATAGAACGGTTTCTGACGGGA-AGCTGACGATCACAAAAGGAGACAAGAG    374
                     |..|.||||||||.| .|||| ||||||..||.||.|..||||||..|| 
BL02872___yhe    326 AGCGGACGGTTTCCG-GGGGAGAGCTGAGAATGACGAGCGGAGACCGGA-    373

BSNT_01665___    375 CCGGGCATATGCTGCCGAAAAG---------CTGACTAAGCAGGAA----    411
                      |||..|       ||.|.|||         |||.||..|...|||    
BL02872___yhe    374 -CGGAAA-------CCTACAAGGCCGATCGCCTGTCTTTGTCTGAAGTGT    415

BSNT_01665___    412 ---CTTTTCCAGTTCTATCAGCCGGAAATA-AAGGGAATGGTGTTACTGA    457
                        |||||       ||..||||.|||||| .||||          ||||
BL02872___yhe    416 ATGCTTTT-------TACGAGCCTGAAATAGGAGGG----------CTGA    448

BSNT_01665___    458 TCTGCC---------TGTATGGGGGCTTGCTTGTGTTTTCGGTATTCTTT    498
                     |||..|         |.|||...|||.|.||..|.||.|||.|.||.||.
BL02872___yhe    449 TCTCGCTCGTTTCTATTTATTTCGGCCTTCTCATTTTCTCGATCTTTTTC    498

BSNT_01665___    499 CAATACGGACAGCAT--TATCTGCTGCAGATGAGCGCCAATCGGATTATT    546
                     ||.|||||.||  ||  ||.||..|||||||||||||.||.||.||.|||
BL02872___yhe    499 CATTACGGCCA--ATTCTACCTCTTGCAGATGAGCGCAAACCGCATCATT    546

BSNT_01665___    547 CAAAAGATGAGGCAGGACGTGTTTTCGC--ACATACAGAGTATGCCGATT    594
                     |||||||||||.|||||  |||.|||||  ||||.||.||..|.||.||.
BL02872___yhe    547 CAAAAGATGAGACAGGA--TGTATTCGCCAACATTCAAAGGCTTCCTATC    594

BSNT_01665___    595 CGCTATTTTGACAACCTTCCGGCCGGAAAAGTCGTTGCGCGGATTACCAA    644
                     |||||||||||.||..|.|||||.||||||.|||||||..||.|.||.||
BL02872___yhe    595 CGCTATTTTGATAATTTGCCGGCAGGAAAAATCGTTGCAAGGGTAACGAA    644

BSNT_01665___    645 TGATACGGAGGCTATCAGGGATTTATATGTCACAGTGCTTTCAACATTTG    694
                     ||||||.||.||.|||.|.|||.|.|||||.||.||.|||||.||.||||
BL02872___yhe    645 TGATACCGAAGCGATCCGCGATCTGTATGTGACCGTTCTTTCGACGTTTG    694

BSNT_01665___    695 TGACAAGCGGA----ATCTATATGTTCGGGATATTCACGGCTTTGTTTCT    740
                     |.||||    |    ||.||||||..|||.||||||.|.||..|||||.|
BL02872___yhe    695 TTACAA----ATATCATTTATATGGCCGGAATATTCGCCGCACTGTTTTT    740

BSNT_01665___    741 GCTTGATGTGAAGCT----TGCGTTTGTATGTCTGGCAATTGTGCC---G    783
                     .||||||||.|.|||    .||||.|||.||| ||   ||||||||   |
BL02872___yhe    741 CCTTGATGTCAGGCTGGCCGGCGTCTGTCTGT-TG---ATTGTGCCCCTG    786

BSNT_01665___    784 ATTATC----TGGCTGTGGTCTGTCATATACCGGAGATATGCGTCATATT    829
                     |||.||    .|||||    |||   |.||.||.|.||..||.|||...|
BL02872___yhe    787 ATTGTCATTTGGGCTG----CTG---TTTATCGAAAATTCGCTTCAGGCT    829

BSNT_01665___    830 ACAACCAAAAAATCCGCTCGATCAACAGTGACATTAACGCAAAAATGAAT    879
                     ||||.||.|||.|..|.||.||||||||.||.||.|||||.|||||||||
BL02872___yhe    830 ACAATCATAAACTTAGGTCAATCAACAGCGAGATCAACGCCAAAATGAAT    879

BSNT_01665___    880 GAGTCAATTCAAGGCATGACCATTATTCAGGCTTTCCGCCATCAAAAGGA    929
                     ||.||.||||||||||||||.|||||||||||.|||||.|....|.||||
BL02872___yhe    880 GAATCGATTCAAGGCATGACGATTATTCAGGCATTCCGGCGCGGACAGGA    929

BSNT_01665___    930 AACAATGAG-AGAATTTGAGGAATTAAATGAATCA--CATTTTTATTTCC    976
                     .|||| .|| |||||||||..|..|.|||||  ||  ||.|||.|||.||
BL02872___yhe    930 CACAA-AAGAAGAATTTGAACAGCTGAATGA--CAGCCACTTTCATTACC    976

BSNT_01665___    977 AAAACAGGATGCTGAATTTAAACTC-CTTAATGTCCCATAATTTGGTCAA   1025
                     ||||.|..||||||||.|||||||| ||| ||||||||.||.||||||||
BL02872___yhe    977 AAAATAAAATGCTGAAATTAAACTCGCTT-ATGTCCCACAACTTGGTCAA   1025

BSNT_01665___   1026 TGTCATCC---GCAATCTTGCGTTCGTCTGTCTGATCTGGCATTTTGGCG   1072
                        |||.|   |.|||.|...||||..|..|||.||.|||.||||.||.|
BL02872___yhe   1026 ---CATTCTGAGAAATGTGATGTTCACCGCTCTAATATGGTATTTCGGGG   1072

BSNT_01665___   1073 GTGCGAGCCTGAATGCGGCCGGGATTGTTTCTATCGGTGTGCTGTACGCG   1122
                     |.||...||||||.||||..||.||..||||.|||||.||.||.||.||.
BL02872___yhe   1073 GAGCTGCCCTGAACGCGGAAGGAATGATTTCAATCGGCGTACTCTATGCA   1122

BSNT_01665___   1123 TTTGTCGATTATTTGAACCGGTTATTTCAGCCGATCACAGGCATCGTCAA   1172
                     ||.||||||||.|||||.||.||||||||||||||.||.|||||||||||
BL02872___yhe   1123 TTCGTCGATTACTTGAATCGTTTATTTCAGCCGATTACGGGCATCGTCAA   1172

BSNT_01665___   1173 TCAGTTTTCAAAGCTGGAGCTTGCAAGGGTCTCCGCCGGGCGTGTTTTTG   1222
                     .||||||.|.|||||.||..|.||..|.||.||..|.|.|||.|||||..
BL02872___yhe   1173 CCAGTTTGCCAAGCTTGAATTGGCGCGCGTATCATCGGAGCGGGTTTTCC   1222

BSNT_01665___   1223 AACTGCTTGAAGAAAAGAATACGGAAGAACCGGG------------TGAA   1260
                     ..|||||               |||.||.|||||            .||.
BL02872___yhe   1223 GCCTGCT---------------GGATGAGCCGGGCGTCGATGTCAAAGAG   1257

BSNT_01665___   1261 CCG----GCGAAGGAGCGCGCGCTGGGGCGGGTTGAATTTCGTGATGTGT   1306
                     |||    |||||.|||||||    ||||||.||.|..|||...|||||.|
BL02872___yhe   1258 CCGAGCAGCGAAAGAGCGCG----GGGGCGAGTCGTGTTTGAGGATGTAT   1303

BSNT_01665___   1307 CATTTGCG-TATCAAGAAGGTGAAGAGGTATT--AAAGCGTATTTCCTTT   1353
                     ||||| || |||||.||.||||||||.||..|  |||.|  ||.||.|||
BL02872___yhe   1304 CATTT-CGCTATCATGACGGTGAAGATGTGCTGAAAAAC--ATCTCATTT   1350

BSNT_01665___   1354 ACTGCGCAAAAAGGCGAAACCGTAGCGCTCGTCGGCCATACCGGATCAGG   1403
                     ...|||.|..||||.||.|||||.||..|.|||||.|||||.||.|||||
BL02872___yhe   1351 GAAGCGAAGCAAGGGGAGACCGTTGCATTGGTCGGTCATACGGGCTCAGG   1400

BSNT_01665___   1404 AAAAAGCTCGATTTTGAATCTGCTGTTTCGTTTTTATGATGCGCAAAAAG   1453
                     .||||||||.||..|||||.|.||.||.||.|||||.|||....||||.|
BL02872___yhe   1401 CAAAAGCTCAATCATGAATGTTCTTTTCCGCTTTTACGATATTGAAAAGG   1450

BSNT_01665___   1454 GTGATGTCTTAATTGATGGAAAAAGCATTTACAACATGTCAAGACAGGAA   1503
                     |.||||||..|||.||.||.|.||||||.||..|.||||||||.||||||
BL02872___yhe   1451 GCGATGTCAAAATCGACGGCAGAAGCATATATGATATGTCAAGGCAGGAA   1500

BSNT_01665___   1504 CTCAGATCCCATATGGGCATTGTGCTTCAGGACCCGTACTTATTCTCGGG   1553
                     .|||||...|||||||||||.||.||.|||||.||.||||||||.||.||
BL02872___yhe   1501 ATCAGAAAGCATATGGGCATCGTTCTCCAGGATCCTTACTTATTTTCCGG   1550

BSNT_01665___   1554 TACAATCGGATCTAACGTAAGTCTGGATGACGAAAGAATGACTGA-----   1598
                     .||.||.|..||.||.||.||.||   ||||     |||| ||||     
BL02872___yhe   1551 CACGATTGCTTCAAATGTCAGCCT---TGAC-----AATG-CTGATATTA   1591

BSNT_01665___   1599 ----AGAAGAAATAAAAAATGCACTGCGGCAAGTCGGTGCTGAGCCTCTT   1644
                         |||..|||||.||.|.||..||...||.|||||.||         |
BL02872___yhe   1592 CTAGAGAGCAAATAGAAGACGCCTTGAAACAGGTCGGGGC---------T   1632

BSNT_01665___   1645 CTTAAGAAG---------CTTCCGAAGGGCATTAATGAGCCCGTGATTGA   1685
                     |||.||..|         ||.|||||.|||.||.|.|||||.||.||.||
BL02872___yhe   1633 CTTGAGGTGCTCGCCCGTCTGCCGAAAGGCCTTGACGAGCCGGTCATCGA   1682

BSNT_01665___   1686 AAAAGGCAGCACGCTATCCTCTGGAGAGCGGCAGTTAATTTCTTTCGCTA   1735
                     ||||||.|||||.||.||.||.|||||..|||||.|.||.||.||.||..
BL02872___yhe   1683 AAAAGGAAGCACCCTTTCTTCAGGAGAAAGGCAGCTGATCTCGTTTGCCC   1732

BSNT_01665___   1736 GAGCTTTGGCGTTTGATCCCGCGA-TCTTGATTTTAGATGAGGCAACGGC   1784
                     |.||..||||.|..|||||.||.| |||| ||||||||.|||||.|||||
BL02872___yhe   1733 GTGCGCTGGCATACGATCCGGCTATTCTT-ATTTTAGACGAGGCGACGGC   1781

BSNT_01665___   1785 GCATATTGATACAGAGACAGAGGCCGTGATCCAGAAGGCGCTTGATGTCG   1834
                     .|||||.|||||.||.|||||.||.||.||.||.||.||||||||.||||
BL02872___yhe   1782 CCATATCGATACCGAAACAGAAGCGGTCATTCAAAAAGCGCTTGACGTCG   1831

BSNT_01665___   1835 TCAAACAAGGACGCACCACCTTCGTCATCGCTCACCGGCTTTCAACAATC   1884
                     ||||||||||.|||||.|||||..|||||||.|||.||||.|||||.|||
BL02872___yhe   1832 TCAAACAAGGGCGCACAACCTTTATCATCGCCCACAGGCTGTCAACGATC   1881

BSNT_01665___   1885 AGAAATGCTGATCAGATTTTGGTTCTTGATAAAGGAGAAATTGTTGAGAG   1934
                     |.|||.||.||.||||||.||||.|||||.|||||....|||.|.||.||
BL02872___yhe   1882 AAAAACGCCGACCAGATTCTGGTGCTTGAAAAAGGCCGGATTATCGAAAG   1931

BSNT_01665___   1935 AGGGAACCACGAGGAATTGATG--GCATTAGAAGGCCGATATTATCAAAT   1982
                     .||.||.||.||.||..|||||  |||  |.||||||.|||.||||||||
BL02872___yhe   1932 GGGAAATCATGAAGAGCTGATGAAGCA--AAAAGGCCAATACTATCAAAT   1979

BSNT_01665___   1983 GTATGAACTGCAAAA-GGGACAGAAACATTCC--ATTGCATAA   2022
                     ||||||||||||||| ||||.||.|||   ||  ||.|..|||
BL02872___yhe   1980 GTATGAACTGCAAAAGGGGAAAGGAAC---CCTGATAGGGTAA   2019


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