Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00394 and BL02881

See Amino acid alignment / Visit BSNT_00394 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_00394.1.5803.seq
#    -bsequence dna-align/BL02881.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00394-BL02881.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00394-BL02881.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00394
# 2: BL02881
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 486
# Identity:     253/486 (52.1%)
# Similarity:   253/486 (52.1%)
# Gaps:         138/486 (28.4%)
# Score: 538.5
# 
#
#=======================================

BSNT_00394         1 ---------------ATGTATACACTTC--AAGAAATTAGTAAACCTAAA     33
                                    ||     ||.|||  |.|              ||.
BL02881            1 TTGCTGTGGTACGAGAT-----CATTTCGGAGG--------------AAG     31

BSNT_00394        34 AGAAAAAAACTAGTGAAAAATATTGAGAAG---------CACTTAAAGAA     74
                     |||.||||||  ||     |||||.||..|         ||.||.|.|||
BL02881           32 AGAGAAAAAC--GT-----ATATTAAGCGGATCGAATTTCATTTGAGGAA     74

BSNT_00394        75 CTACAATAATTACAAAGTTGCCATCCTTAATCTAAGTAAACAGCTTGAAT    124
                     .|..||.||||||||||..|||.|.||.||| |.||.||..|    ||||
BL02881           75 TTGGAAAAATTACAAAGCCGCCGTGCTCAAT-TTAGAAAGGA----GAAT    119

BSNT_00394       125 TCA-TAGCTACAAATGATAATATGGAAATCT-----TTAAAGAAAGCATC    168
                     ..| .||...||||.||    ||||   .||     |.||||||||.|.|
BL02881          120 GGAGAAGGAGCAAAAGA----ATGG---GCTCGCCGTCAAAGAAAGAAAC    162

BSNT_00394       169 GATGATGACTGTGAGTTTCAGGA-ATCGGTGGATAAACTTGCCGGTGAGT    217
                     |.|||                 | |||   ||||..||  ||||      
BL02881          163 GCTGA-----------------ATATC---GGATCGAC--GCCG------    184

BSNT_00394       218 TGCAACA-------TATCAAACTT--CTAAAAGATTCAATCGATA----T    254
                        ||.|       ||||||..||  ||   .|||||.||.||.|    |
BL02881          185 ---AAAAAAGGCTCTATCAATTTTTGCT---TGATTCGATGGAAACGGCT    228

BSNT_00394       255 TTCATTATCAGAATTAACAGAACTAGAGTACAGA--TTTGTTCAATACCG    302
                     .||    ||.|||||....|||||.|||  |.||  .|.||..|||.|||
BL02881          229 GTC----TCCGAATTGGATGAACTCGAG--CGGAAGCTGGTAGAATGCCG    272

BSNT_00394       303 TTATTTTAAAAATTGGACCATTGAAAAAAGTGCACTAGAGATCGGTTATA    352
                     .|||.||.|.||.||||.|||.|..|||.|.||..|.||.|||||.||.|
BL02881          273 GTATATTCATAACTGGAGCATGGGCAAATGCGCGATGGAAATCGGCTACA    322

BSNT_00394       353 GTGATAAAGCACTGTTTGTAAT-ACGTAATCAGGTAATGGATAA-ATTAT    400
                     |.||.|||.|.||||||.|||| |...|||| |.|..||||.|| .|..|
BL02881          323 GCGAAAAAACGCTGTTTTTAATGAAAAAATC-GCTGCTGGACAAGCTGCT    371

BSNT_00394       401 TGATCAGCTTAGGGAGCGTTGTTTAC----ATGTAA    432
                     || |||||||    .|||..|.|.||    ||.|||
BL02881          372 TG-TCAGCTT----GGCGGCGATCACGAATATTTAA    402


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